Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Bh-RNaseH:2'-SMe-DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4opk_B_DC1_DG2 | A-B | AB01 | 67 | 0.20 |
| 02 | 4opk_B_DG2_DC3 | BBB | BB00 | 79 | 0.22 |
| 03 | 4opk_B_DC3_DG4 | NAN | NANT | 0 | 0.43 |
| 04 | 4opk_B_DG4_DA5 | BBB | BB00 | 75 | 0.34 |
| 05 | 4opk_B_DA5_DA6 | BBB | BB00 | 87 | 0.21 |
| 06 | 4opk_B_DA6_USM7 | B-A | BA13 | 83 | 0.18 |
| 07 | 4opk_B_USM7_DT8 | NAN | NANT | 0 | 0.46 |
| 08 | 4opk_B_DT8_DC9 | AAA | AA00 | 12 | 0.28 |
| 09 | 4opk_B_DC9_DG10 | A-B | AB01 | 80 | 0.13 |
| 10 | 4opk_B_DG10_DC11 | B-A | BA05 | 75 | 0.16 |
| 11 | 4opk_B_DC11_DG12 | A-B | AB01 | 69 | 0.30 |
| 12 | 4opk_D_DC.A1_DG.A2 | NAN | NANT | 0 | 0.46 |
| 13 | 4opk_D_DC.B1_DG.B2 | A-B | AB01 | 56 | 0.25 |
| 14 | 4opk_D_DG.A2_DC3 | BBB | BB01 | 71 | 0.26 |
| 15 | 4opk_D_DG.B2_DC3 | BBB | BB01 | 75 | 0.20 |
| 16 | 4opk_D_DC3_DG4 | NAN | NANT | 0 | 0.48 |
| 17 | 4opk_D_DG4_DA5 | BBB | BB00 | 82 | 0.32 |
| 18 | 4opk_D_DA5_DA6 | BBB | BB00 | 90 | 0.22 |
| 19 | 4opk_D_DA6_USM7 | B-A | BA13 | 72 | 0.21 |
| 20 | 4opk_D_USM7_DT8 | AAA | AA04 | 17 | 0.29 |
| 21 | 4opk_D_DT8_DC9 | AAA | AA02 | 21 | 0.47 |
| 22 | 4opk_D_DC9_DG10 | A-B | AB01 | 81 | 0.15 |
| 23 | 4opk_D_DG10_DC11 | B-A | BA05 | 85 | 0.14 |
| 24 | 4opk_D_DC11_DG12 | A-B | AB03 | 49 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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