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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA

Results of the assignment of 232 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0014oo8_B_G1_G2AAAAA00830.21 AA00
0024oo8_B_G2_A3AAAAA00730.23 AA00
0034oo8_B_A3_A4AAAAA00920.16 AA00
0044oo8_B_A4_A5AAAAA00950.13 AA00
0054oo8_B_A5_U6AAAAA00820.17 AA00
0064oo8_B_U6_U7AAwAA06760.26 AA06
0074oo8_B_U7_A8AAwAA11940.32 AA11
0084oo8_B_A8_G9AAwAA11940.19 AA11
0094oo8_B_G9_G10AAAAA08880.23 AA08
0104oo8_B_G10_U11AAAAA00930.13 AA00
0114oo8_B_U11_G12AAAAA00510.26 AA00
0124oo8_B_G12_C13AAAAA00940.13 AA00
0134oo8_B_C13_G14AAAAA00880.15 AA00
0144oo8_B_G14_C15AAAAA00850.16 AA00
0154oo8_B_C15_U16AAAAA00940.10 AA00
0164oo8_B_U16_U17AAAAA00750.26 AA00
0174oo8_B_U17_G18AAAAA00600.34 AA00
0184oo8_B_G18_G19AAAAA00860.16 AA00
0194oo8_B_G19_C20AAwAA01850.20 AA01
0204oo8_B_C20_G21AAAAA08670.39 AA08
0214oo8_B_G21_U22AAAAA08880.18 AA08
0224oo8_B_U22_U23AAAAA08870.17 AA08
0234oo8_B_U23_U24AAAAA08580.34 AA08
0244oo8_B_U24_U25AAAAA00900.16 AA00
0254oo8_B_U25_A26AAAAA00900.13 AA00
0264oo8_B_A26_G27AAAAA00840.19 AA00
0274oo8_B_G27_A28NANNANT01.06 OP06
0284oo8_B_A28_G29OPNOP17220.29 OP17
0294oo8_B_G29_C30AAAAA00720.14 AA00
0304oo8_B_C30_U31AAAAA00910.12 AA00
0314oo8_B_U31_A32AAAAA00900.11 AA00
0324oo8_B_A32_G33AAwAA01490.27 AA01
0334oo8_B_G33_A34NANNANT00.46 OP03
0344oo8_B_A34_A35AAwAA01190.36 AA01
0354oo8_B_A35_A36AAwAA06540.26 AA06
0364oo8_B_A36_U37NANNANT00.89 AA10
0374oo8_B_U37_A38AAwAA01610.39 AA01
0384oo8_B_A38_G39NANNANT01.37 OP24
0394oo8_B_G39_C40NANNANT00.39 AA10
0404oo8_B_C40_A41AAAAA08800.16 AA08
0414oo8_B_A41_A42AAAAA08870.28 AA08
0424oo8_B_A42_G43A-BAB05750.27 AB05
0434oo8_B_G43_U44OPNOP20280.66 OP20
0444oo8_B_U44_U45OPNOP11570.54 OP11
0454oo8_B_U45_A46AAAAA00860.18 AA00
0464oo8_B_A46_A47AAAAA00710.13 AA00
0474oo8_B_A47_A48AAAAA08760.19 AA08
0484oo8_B_A48_A49AAAAA00930.11 AA00
0494oo8_B_A49_U50AAAAA00790.22 AA00
0504oo8_B_U50_A51NANNANT02.32 ZZ1S
0514oo8_B_A51_A52NANNANT00.89 OPS1
0524oo8_B_A52_G53NANNANT01.04 AA08
0534oo8_B_G53_G54AAAAA00800.20 AA00
0544oo8_B_G54_C55AAAAA08620.36 AA08
0554oo8_B_C55_U56NANNANT00.93 OP04
0564oo8_B_U56_A57NANNANT00.85 OP20
0574oo8_B_A57_G58NANNANT00.59 ZZ02
0584oo8_B_G58_U59NANNANT00.98 OP17
0594oo8_B_U59_C60OPNOP06310.52 OP06
0604oo8_B_C60_C61AAAAA00960.15 AA00
0614oo8_B_C61_G62AAAAA00860.20 AA00
0624oo8_B_G62_U63NANNANT00.88 OP07
0634oo8_B_U63_U64OPNOP11780.39 OP11
0644oo8_B_U64_A65AAAAA00270.43 AA00
0654oo8_B_A65_U66AAAAA08590.33 AA08
0664oo8_B_U66_C67AAAAA00390.43 AA00
0674oo8_B_C67_A68NANNANT01.39 OP17
0684oo8_B_A68_A69AAAAA00510.39 AA00
0694oo8_B_A69_C70AAAAA00890.17 AA00
0704oo8_B_C70_U71AAwAA01810.20 AA01
0714oo8_B_U71_U72NANNANT00.49 AA10
0724oo8_B_U72_G73AAwAA01390.44 AA01
0734oo8_B_G73_A74OPNOP03220.36 OP03
0744oo8_B_A74_A75AAAAA08740.35 AA08
0754oo8_B_A75_A76AAAAA08810.23 AA08
0764oo8_B_A76_A77NANNANT01.13 AA08
0774oo8_B_A77_A78AAAAA00850.16 AA00
0784oo8_B_A78_G79AAwAA01620.22 AA01
0794oo8_B_G79_U80AAAAA08280.30 AA08
0804oo8_B_U80_G81A-BAB05260.61 AB05
0814oo8_B_G81_G82NANNANT01.42 OP17
0824oo8_B_G82_C83AAAAA00650.22 AA00
0834oo8_B_C83_A84AAwAA01520.30 AA01
0844oo8_B_A84_C85AAAAA08920.15 AA08
0854oo8_B_C85_C86AAAAA00790.09 AA00
0864oo8_B_C86_G87AAwAA10750.23 AA10
0874oo8_B_G87_A88A-BAB05740.33 AB05
0884oo8_B_A88_G89NANNANT01.02 OP29
0894oo8_B_G89_U90OPNOP22780.27 OP22
0904oo8_B_U90_C91NANNANT01.71 OP23
0914oo8_B_C91_G92AAAAA00910.16 AA00
0924oo8_B_G92_G93AAAAA00900.14 AA00
0934oo8_B_G93_U94AAAAA00920.11 AA00
0944oo8_B_U94_G95AAAAA00830.13 AA00
0954oo8_B_G95_C96AAAAA00780.21 AA00
0964oo8_B_C96_U97AAAAA00880.20 AA00
0974oo8_C_DG1_DC2AAAAA00870.23 AA00
0984oo8_C_DC2_DC3AAAAA00920.13 AA00
0994oo8_C_DC3_DA4AAAAA00860.22 AA00
1004oo8_C_DA4_DA5AAAAA00650.29 AA00
1014oo8_C_DA5_DG6AAAAA00980.19 AA00
1024oo8_C_DG6_DC7AAAAA00910.20 AA00
1034oo8_C_DC7_DG8AAAAA00920.17 AA00
1044oo8_C_DG8_DC9AAAAA00880.18 AA00
1054oo8_C_DC9_DA10AAAAA00850.19 AA00
1064oo8_C_DA10_DC11AAAAA00670.31 AA00
1074oo8_C_DC11_DC12A-BAB01500.33 AB01
1084oo8_C_DC12_DT13BBBBB00700.23 BB00
1094oo8_C_DT13_DA14BBBBB00320.37 BB00
1104oo8_C_DA14_DA15B-ABA09300.52 BA09
1114oo8_C_DA15_DT16AAwAA01250.48 AA01
1124oo8_C_DT16_DT17AAAAA00450.27 AA00
1134oo8_C_DT17_DT18AAAAA00750.21 AA00
1144oo8_C_DT18_DC19AAwAA01900.17 AA01
1154oo8_C_DC19_DC20AAAAA00720.25 AA00
1164oo8_E_G1_G2AAAAA00810.21 AA00
1174oo8_E_G2_A3AAAAA00500.28 AA00
1184oo8_E_A3_A4AAAAA00930.15 AA00
1194oo8_E_A4_A5AAAAA00920.13 AA00
1204oo8_E_A5_U6AAAAA00880.12 AA00
1214oo8_E_U6_U7AAAAA00870.12 AA00
1224oo8_E_U7_A8AAAAA00840.16 AA00
1234oo8_E_A8_G9AAAAA00820.16 AA00
1244oo8_E_G9_G10AAwAA01740.26 AA01
1254oo8_E_G10_U11AAAAA08820.22 AA08
1264oo8_E_U11_G12AAAAA00820.18 AA00
1274oo8_E_G12_C13AAAAA00950.12 AA00
1284oo8_E_C13_G14AAAAA00860.17 AA00
1294oo8_E_G14_C15AAAAA00900.16 AA00
1304oo8_E_C15_U16AAAAA00880.16 AA00
1314oo8_E_U16_U17AAwAA01480.26 AA01
1324oo8_E_U17_G18AAAAA08810.26 AA08
1334oo8_E_G18_G19AAAAA08800.17 AA08
1344oo8_E_G19_C20AAwAA01830.21 AA01
1354oo8_E_C20_G21AAAAA00390.46 AA00
1364oo8_E_G21_U22AAAAA00870.20 AA00
1374oo8_E_U22_U23AAAAA08860.15 AA08
1384oo8_E_U23_U24AAAAA00600.33 AA00
1394oo8_E_U24_U25AAAAA00870.18 AA00
1404oo8_E_U25_A26AAAAA00880.15 AA00
1414oo8_E_A26_G27AAAAA00860.17 AA00
1424oo8_E_G27_A28NANNANT01.06 OP06
1434oo8_E_A28_G29OPNOP17610.30 OP17
1444oo8_E_G29_C30AAAAA00680.17 AA00
1454oo8_E_C30_U31AAAAA00970.10 AA00
1464oo8_E_U31_A32AAAAA00660.26 AA00
1474oo8_E_A32_G33AAAAA00560.32 AA00
1484oo8_E_G33_A34OPNOP03150.44 OP03
1494oo8_E_A34_A35AAAAA08140.58 AA08
1504oo8_E_A35_A36AAAAA00900.17 AA00
1514oo8_E_A36_U37NANNANT00.89 AA10
1524oo8_E_U37_A38AAwAA06590.25 AA06
1534oo8_E_A38_G39NANNANT00.79 AA10
1544oo8_E_G39_C40AAwAA10330.36 AA10
1554oo8_E_C40_A41AAAAA08950.20 AA08
1564oo8_E_A41_A42AAAAA00640.36 AA00
1574oo8_E_A42_G43A-BAB05870.25 AB05
1584oo8_E_G43_U44OPNOP20260.65 OP20
1594oo8_E_U44_U45OPNOP11490.56 OP11
1604oo8_E_U45_A46AAAAA00800.18 AA00
1614oo8_E_A46_A47AAAAA00590.14 AA00
1624oo8_E_A47_A48AAAAA00740.27 AA00
1634oo8_E_A48_A49AAAAA00950.10 AA00
1644oo8_E_A49_U50AAAAA08750.15 AA08
1654oo8_E_U50_A51NANNANT01.64 OP02
1664oo8_E_A51_A52NANNANT00.86 OPS1
1674oo8_E_A52_G53AAwAA05500.45 AA05
1684oo8_E_G53_G54AAAAA00750.23 AA00
1694oo8_E_G54_C55A-BAB05780.24 AB05
1704oo8_E_C55_U56NANNANT01.12 BA16
1714oo8_E_U56_A57NANNANT01.12 AB04
1724oo8_E_A57_G58NANNANT00.52 ZZ02
1734oo8_E_G58_U59NANNANT00.98 OP17
1744oo8_E_U59_C60OPNOP06360.51 OP06
1754oo8_E_C60_C61AAAAA00940.12 AA00
1764oo8_E_C61_G62AAAAA00920.20 AA00
1774oo8_E_G62_U63NANNANT00.87 IC02
1784oo8_E_U63_U64OPNOP11680.40 OP11
1794oo8_E_U64_A65AAAAA00220.44 AA00
1804oo8_E_A65_U66AAAAA00460.40 AA00
1814oo8_E_U66_C67AAAAA00380.32 AA00
1824oo8_E_C67_A68NANNANT01.37 OP17
1834oo8_E_A68_A69AAAAA08630.35 AA08
1844oo8_E_A69_C70AAAAA00860.16 AA00
1854oo8_E_C70_U71AAAAA00780.22 AA00
1864oo8_E_U71_U72AAAAA00860.19 AA00
1874oo8_E_U72_G73AAAAA00730.30 AA00
1884oo8_E_G73_A74OPNOP03690.12 OP03
1894oo8_E_A74_A75NANNANT00.55 AA10
1904oo8_E_A75_A76NANNANT00.37 AA04
1914oo8_E_A76_A77NANNANT00.77 AA05
1924oo8_E_A77_A78AAAAA00850.13 AA00
1934oo8_E_A78_G79NANNANT00.44 AA10
1944oo8_E_G79_U80AAAAA00180.39 AA00
1954oo8_E_U80_G81A-BAB05180.66 AB05
1964oo8_E_G81_G82NANNANT01.46 OP17
1974oo8_E_G82_C83AAAAA00850.19 AA00
1984oo8_E_C83_A84AAAAA00960.11 AA00
1994oo8_E_A84_C85AAAAA00860.12 AA00
2004oo8_E_C85_C86AAAAA00930.08 AA00
2014oo8_E_C86_G87AAAAA08540.27 AA08
2024oo8_E_G87_A88A-BAB05720.31 AB05
2034oo8_E_A88_G89NANNANT01.52 OP13
2044oo8_E_G89_U90OPNOP22160.27 OP22
2054oo8_E_U90_C91NANNANT01.66 OP23
2064oo8_E_C91_G92A-BAB04760.31 AB04
2074oo8_E_G92_G93B-ABA0180.30 BA01
2084oo8_E_G93_U94AAAAA00890.15 AA00
2094oo8_E_U94_G95AAAAA00910.14 AA00
2104oo8_E_G95_C96AAwAA10560.26 AA10
2114oo8_E_C96_U97NANNANT00.94 AA04
2124oo8_F_DC-1_DA0NANNANT00.80 BB03
2134oo8_F_DA0_DG1NANNANT00.68 OP17
2144oo8_F_DG1_DC2NANNANT00.53 BA08
2154oo8_F_DC2_DC3AAAAA00860.28 AA00
2164oo8_F_DC3_DA4AAAAA00840.26 AA00
2174oo8_F_DA4_DA5AAAAA00630.29 AA00
2184oo8_F_DA5_DG6AAAAA00980.18 AA00
2194oo8_F_DG6_DC7AAAAA00930.21 AA00
2204oo8_F_DC7_DG8AAAAA00890.20 AA00
2214oo8_F_DG8_DC9AAAAA00770.18 AA00
2224oo8_F_DC9_DA10AAAAA00800.21 AA00
2234oo8_F_DA10_DC11AAAAA00910.20 AA00
2244oo8_F_DC11_DC12AAAAA00940.26 AA00
2254oo8_F_DC12_DT13AAAAA00910.23 AA00
2264oo8_F_DT13_DA14A-BAB05380.24 AB05
2274oo8_F_DA14_DA15B-ABA0190.42 BA01
2284oo8_F_DA15_DT16AAAAA00900.16 AA00
2294oo8_F_DT16_DT17AAAAA00880.14 AA00
2304oo8_F_DT17_DT18AAAAA00820.19 AA00
2314oo8_F_DT18_DC19AAwAA01880.17 AA01
2324oo8_F_DC19_DC20AAAAA00740.22 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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