Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4nqa_E_DT501_DA502 | BBw | BB16 | 60 | 0.45 |
| 02 | 4nqa_E_DA502_DA503 | NAN | NANT | 0 | 0.35 |
| 03 | 4nqa_E_DA503_DG504 | AAA | AA00 | 67 | 0.26 |
| 04 | 4nqa_E_DG504_DG505 | NAN | NANT | 0 | 0.43 |
| 05 | 4nqa_E_DG505_DT506 | BBB | BB01 | 39 | 0.21 |
| 06 | 4nqa_E_DT506_DC507 | BBB | BB00 | 58 | 0.47 |
| 07 | 4nqa_E_DC507_DA508 | NAN | NANT | 0 | 0.53 |
| 08 | 4nqa_E_DA508_DC509 | NAN | NANT | 0 | 0.59 |
| 09 | 4nqa_E_DC509_DT510 | AAA | AA00 | 49 | 0.33 |
| 10 | 4nqa_E_DT510_DT511 | AAA | AA00 | 73 | 0.31 |
| 11 | 4nqa_E_DT511_DC512 | NAN | NANT | 0 | 0.36 |
| 12 | 4nqa_E_DC512_DA513 | NAN | NANT | 0 | 0.32 |
| 13 | 4nqa_E_DA513_DG514 | NAN | NANT | 0 | 0.43 |
| 14 | 4nqa_E_DG514_DG515 | BBB | BB01 | 23 | 0.22 |
| 15 | 4nqa_E_DG515_DT516 | BBB | BB01 | 41 | 0.25 |
| 16 | 4nqa_E_DT516_DC517 | BBB | BB00 | 44 | 0.47 |
| 17 | 4nqa_E_DC517_DA518 | BB2 | BB07 | 78 | 0.22 |
| 18 | 4nqa_F_DT501_DA502 | BBB | BB00 | 58 | 0.28 |
| 19 | 4nqa_F_DA502_DT503 | BBB | BB01 | 86 | 0.15 |
| 20 | 4nqa_F_DT503_DG504 | BBB | BB00 | 32 | 0.48 |
| 21 | 4nqa_F_DG504_DA505 | BB2 | BB07 | 68 | 0.22 |
| 22 | 4nqa_F_DA505_DC506 | B-A | BA05 | 87 | 0.14 |
| 23 | 4nqa_F_DC506_DC507 | BBB | BB01 | 24 | 0.33 |
| 24 | 4nqa_F_DC507_DT508 | BBB | BB00 | 25 | 0.32 |
| 25 | 4nqa_F_DT508_DG509 | NAN | NANT | 0 | 0.53 |
| 26 | 4nqa_F_DG509_DA510 | B12 | BB04 | 22 | 0.46 |
| 27 | 4nqa_F_DA510_DA511 | BBB | BB00 | 48 | 0.35 |
| 28 | 4nqa_F_DA511_DG512 | B-A | BA05 | 72 | 0.32 |
| 29 | 4nqa_F_DG512_DT513 | A-B | AB03 | 55 | 0.42 |
| 30 | 4nqa_F_DT513_DG514 | BBB | BB00 | 74 | 0.27 |
| 31 | 4nqa_F_DG514_DA515 | BB2 | BB07 | 89 | 0.17 |
| 32 | 4nqa_F_DA515_DC516 | BBB | BB00 | 94 | 0.19 |
| 33 | 4nqa_F_DC516_DC517 | B12 | BB05 | 82 | 0.21 |
| 34 | 4nqa_F_DC517_DT518 | NAN | NANT | 0 | 0.68 |
| 35 | 4nqa_L_DT501_DA502 | BBB | BB00 | 51 | 0.45 |
| 36 | 4nqa_L_DA502_DA503 | NAN | NANT | 0 | 0.33 |
| 37 | 4nqa_L_DA503_DG504 | AAA | AA00 | 65 | 0.25 |
| 38 | 4nqa_L_DG504_DG505 | A-B | AB04 | 36 | 0.40 |
| 39 | 4nqa_L_DG505_DT506 | BBB | BB01 | 22 | 0.25 |
| 40 | 4nqa_L_DT506_DC507 | BBB | BB00 | 56 | 0.43 |
| 41 | 4nqa_L_DC507_DA508 | BB2 | BB07 | 79 | 0.18 |
| 42 | 4nqa_L_DA508_DC509 | B-A | BA09 | 49 | 0.47 |
| 43 | 4nqa_L_DC509_DT510 | AAA | AA00 | 74 | 0.34 |
| 44 | 4nqa_L_DT510_DT511 | A-B | AB05 | 74 | 0.25 |
| 45 | 4nqa_L_DT511_DC512 | BBB | BB00 | 63 | 0.38 |
| 46 | 4nqa_L_DC512_DA513 | B-A | BA08 | 82 | 0.28 |
| 47 | 4nqa_L_DA513_DG514 | A-B | AB05 | 42 | 0.20 |
| 48 | 4nqa_L_DG514_DG515 | BBB | BB01 | 31 | 0.16 |
| 49 | 4nqa_L_DG515_DT516 | BBB | BB01 | 39 | 0.17 |
| 50 | 4nqa_L_DT516_DC517 | BBB | BB00 | 44 | 0.42 |
| 51 | 4nqa_L_DC517_DA518 | BB2 | BB07 | 87 | 0.29 |
| 52 | 4nqa_M_DT501_DA502 | B12 | BB04 | 71 | 0.20 |
| 53 | 4nqa_M_DA502_DT503 | B-A | BA05 | 54 | 0.20 |
| 54 | 4nqa_M_DT503_DG504 | BBw | BB16 | 39 | 0.46 |
| 55 | 4nqa_M_DG504_DA505 | BB2 | BB07 | 74 | 0.31 |
| 56 | 4nqa_M_DA505_DC506 | B-A | BA05 | 87 | 0.18 |
| 57 | 4nqa_M_DC506_DC507 | BBB | BB01 | 66 | 0.21 |
| 58 | 4nqa_M_DC507_DT508 | BBB | BB01 | 44 | 0.24 |
| 59 | 4nqa_M_DT508_DG509 | BBB | BB01 | 38 | 0.30 |
| 60 | 4nqa_M_DG509_DA510 | BB2 | BB07 | 64 | 0.21 |
| 61 | 4nqa_M_DA510_DA511 | BBB | BB00 | 93 | 0.16 |
| 62 | 4nqa_M_DA511_DG512 | B12 | BB04 | 21 | 0.17 |
| 63 | 4nqa_M_DG512_DT513 | BBB | BB01 | 36 | 0.23 |
| 64 | 4nqa_M_DT513_DG514 | BBB | BB00 | 56 | 0.32 |
| 65 | 4nqa_M_DG514_DA515 | BB2 | BB07 | 69 | 0.24 |
| 66 | 4nqa_M_DA515_DC516 | BBB | BB00 | 82 | 0.32 |
| 67 | 4nqa_M_DC516_DC517 | B-A | BA13 | 42 | 0.42 |
| 68 | 4nqa_M_DC517_DT518 | A-B | AB05 | 40 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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