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Conformers: ABBIImiBZICOPNSYNN
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Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with an annealed double-strand DNA break.

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014mky_E_DG1_DC2NANNANT00.58 BB17
024mky_E_DC2_DG3NANNANT00.45 BA08
034mky_G_DG1_DC2BBBBB00210.37 BB00
044mky_G_DC2_DG3B12BB04400.22 BB04
054mky_I_DG1_DC2BBBBB00190.42 BB00
064mky_I_DC2_DG3miBBB10350.41 BB10
074mky_K_DG1_DC2NANNANT00.51 BB17
084mky_K_DC2_DG3B12BB04690.17 BB04
094mky_F_DG1_DC2AAwAA01310.28 AA01
104mky_F_DC2_DC3AAAAA03120.45 AA03
114mky_F_DC3_DG4NANNANT00.35 BB10
124mky_F_DG4_DC5B-ABA05650.22 BA05
134mky_F_DC5_DA6NANNANT01.31 IC02
144mky_F_DA6_DG7B-ABA01250.29 BA01
154mky_F_DG7_DT8NANNANT00.56 BB17
164mky_F_DT8_DA9NANNANT00.39 BA16
174mky_F_DA9_DC10NANNANT00.67 AB02
184mky_H_DG1_DC2AAAAA00720.12 AA00
194mky_H_DC2_DC3AAAAA00660.25 AA00
204mky_H_DC3_DG4A-BAB01710.18 AB01
214mky_H_DG4_DC5BBBBB01300.43 BB01
224mky_H_DC5_DA6NANNANT01.36 IC02
234mky_H_DA6_DG7B12BB04560.23 BB04
244mky_H_DG7_DT8miBBB10490.34 BB10
254mky_H_DT8_DA9B-ABA10250.54 BA10
264mky_H_DA9_DC10NANNANT00.51 AB02
274mky_J_DG1_DC2NANNANT00.44 AA03
284mky_J_DC2_DC3AAAAA00460.42 AA00
294mky_J_DC3_DG4A-BAB03740.33 AB03
304mky_J_DG4_DC5B-ABA05260.29 BA05
314mky_J_DC5_DA6NANNANT01.33 IC02
324mky_J_DA6_DG7B12BB04210.40 BB04
334mky_J_DG7_DT8NANNANT00.72 BB10
344mky_J_DT8_DA9NANNANT00.44 BA16
354mky_J_DA9_DC10NANNANT00.61 AB02
364mky_L_DG1_DC2AAAAA00110.38 AA00
374mky_L_DC2_DC3AAAAA00110.33 AA00
384mky_L_DC3_DG4A-BAB01620.13 AB01
394mky_L_DG4_DC5B-ABA05510.29 BA05
404mky_L_DC5_DA6NANNANT01.33 IC02
414mky_L_DA6_DG7miBBB10330.32 BB10
424mky_L_DG7_DT8NANNANT00.52 BB00
434mky_L_DT8_DA9NANNANT00.57 BA17
444mky_L_DA9_DC10A-BAB02710.32 AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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