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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the Gas5 GRE Mimic

Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014mce_A_C1_A2AAAAA03140.44 AA03
024mce_A_A2_G3AAAAA00640.21 AA00
034mce_A_G3_U4AAAAA00800.21 AA00
044mce_A_U4_G5AAwAA01170.50 AA01
054mce_A_G5_G6AAAAA08600.24 AA08
064mce_A_G6_U7AAAAA00870.12 AA00
074mce_A_U7_C8AAAAA00880.14 AA00
084mce_A_C8_U9AAAAA08880.15 AA08
094mce_A_U9_U10AAAAA00450.22 AA00
104mce_B_A1_A2AAAAA00680.22 AA00
114mce_B_A2_G3AAAAA00770.16 AA00
124mce_B_G3_A4AAAAA04850.13 AA04
134mce_B_A4_C5AAAAA00830.18 AA00
144mce_B_C5_U6AAAAA00520.25 AA00
154mce_B_U6_G7AAuAA12740.24 AA12
164mce_B_G7_C8AAAAA00800.24 AA00
174mce_B_C8_C9AAAAA00700.21 AA00
184mce_B_C9_U10NANNANT00.41 AA10
194mce_C_C1_A2NANNANT00.61 BA05
204mce_C_A2_G3AAAAA08660.41 AA08
214mce_C_G3_U4AAAAA08830.28 AA08
224mce_C_U4_G5AAwAA01140.55 AA01
234mce_C_G5_G6AAAAA08790.16 AA08
244mce_C_G6_U7AAAAA00930.14 AA00
254mce_C_U7_C8AAAAA08800.28 AA08
264mce_C_C8_U9AAAAA00540.15 AA00
274mce_C_U9_U10AAAAA00690.15 AA00
284mce_D_A1_A2AAAAA00730.16 AA00
294mce_D_A2_G3AAAAA00790.17 AA00
304mce_D_G3_A4AAAAA00780.14 AA00
314mce_D_A4_C5AAAAA00690.22 AA00
324mce_D_C5_U6AAAAA08830.18 AA08
334mce_D_U6_G7AAAAA00380.34 AA00
344mce_D_G7_C8AAAAA00620.20 AA00
354mce_D_C8_C9AAAAA00780.24 AA00
364mce_D_C9_U10AAAAA08830.27 AA08
374mce_D_U10_G11AAAAA03340.32 AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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