Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (23nt). Mn-bound crystal structure at pH 6.5
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4lvm_B_DA1_DC2 | miB | BB10 | 41 | 0.47 |
| 02 | 4lvm_B_DC2_DT3 | miB | BB10 | 70 | 0.41 |
| 03 | 4lvm_B_DT3_DT4 | miB | BB10 | 54 | 0.33 |
| 04 | 4lvm_B_DT4_DT5 | BBB | BB00 | 41 | 0.33 |
| 05 | 4lvm_B_DT5_DA6 | BBB | BB00 | 80 | 0.22 |
| 06 | 4lvm_B_DA6_DT7 | miB | BB12 | 91 | 0.18 |
| 07 | 4lvm_E_DA12_DT13 | A-B | AB04 | 53 | 0.29 |
| 08 | 4lvm_E_DT13_DA14 | BBB | BB00 | 64 | 0.30 |
| 09 | 4lvm_E_DA14_DA15 | miB | BB10 | 55 | 0.64 |
| 10 | 4lvm_E_DA15_DA16 | BBB | BB00 | 78 | 0.25 |
| 11 | 4lvm_E_DA16_DG17 | B-A | BA08 | 47 | 0.33 |
| 12 | 4lvm_E_DG17_DT18 | AAA | AA00 | 56 | 0.30 |
| 13 | 4lvm_E_DT18_DA19 | NAN | NANT | 0 | 0.38 |
| 14 | 4lvm_E_DA19_DT20 | BBw | BB16 | 40 | 0.65 |
| 15 | 4lvm_E_DT20_DA21 | NAN | NANT | 0 | 0.21 |
| 16 | 4lvm_E_DA21_DG22 | NAN | NANT | 0 | 0.89 |
| 17 | 4lvm_E_DG22_DT23 | NAN | NANT | 0 | 0.67 |
| 18 | 4lvm_E_DT23_DG24 | BBB | BB00 | 36 | 0.29 |
| 19 | 4lvm_E_DG24_DT25 | NAN | NANT | 0 | 0.95 |
| 20 | 4lvm_E_DT25_DG26 | NAN | NANT | 0 | 0.85 |
| 21 | 4lvm_D_DA1_DC2 | BBB | BB00 | 52 | 0.37 |
| 22 | 4lvm_D_DC2_DT3 | miB | BB10 | 44 | 0.53 |
| 23 | 4lvm_D_DT3_DT4 | BBB | BB00 | 12 | 0.38 |
| 24 | 4lvm_D_DT4_DT5 | B-A | BA05 | 82 | 0.26 |
| 25 | 4lvm_D_DT5_DA6 | A-B | AB03 | 65 | 0.25 |
| 26 | 4lvm_D_DA6_DT7 | NAN | NANT | 0 | 0.41 |
| 27 | 4lvm_F_DA12_DT13 | NAN | NANT | 0 | 0.75 |
| 28 | 4lvm_F_DT13_DA14 | NAN | NANT | 0 | 0.72 |
| 29 | 4lvm_F_DA14_DA15 | miB | BB10 | 79 | 0.26 |
| 30 | 4lvm_F_DA15_DA16 | B-A | BA05 | 37 | 0.34 |
| 31 | 4lvm_F_DA16_DG17 | NAN | NANT | 0 | 0.34 |
| 32 | 4lvm_F_DG17_DT18 | AAA | AA00 | 45 | 0.29 |
| 33 | 4lvm_F_DT18_DA19 | A-B | AB04 | 19 | 0.46 |
| 34 | 4lvm_F_DA19_DT20 | BBB | BB00 | 54 | 0.30 |
| 35 | 4lvm_F_DT20_DA21 | NAN | NANT | 0 | 0.29 |
| 36 | 4lvm_F_DA21_DG22 | NAN | NANT | 0 | 0.69 |
| 37 | 4lvm_F_DG22_DT23 | NAN | NANT | 0 | 0.68 |
| 38 | 4lvm_F_DT23_DG24 | NAN | NANT | 0 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|