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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the N-terminally acetylated BAH domain of Sir3 bound to the nucleosome core particle

Results of the assignment of 283 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0014ld9_I_DA-72_DT-71BBBBB00140.40 BB00
0024ld9_I_DT-71_DC-70NANNANT00.43 BA08
0034ld9_I_DC-70_DG-69A-BAB05170.43 AB05
0044ld9_I_DG-69_DA-68NANNANT00.42 BB10
0054ld9_I_DA-68_DT-67B-ABA16270.48 BA16
0064ld9_I_DT-67_DG-66A-BAB05390.40 AB05
0074ld9_I_DG-66_DT-65BBBBB00720.28 BB00
0084ld9_I_DT-65_DA-64BBBBB00780.25 BB00
0094ld9_I_DA-64_DT-63BBBBB00440.33 BB00
0104ld9_I_DT-63_DA-62BBBBB00240.38 BB00
0114ld9_I_DA-62_DT-61B12BB04530.43 BB04
0124ld9_I_DT-61_DA-60B12BB04300.29 BB04
0134ld9_I_DA-60_DT-59BBwBB17490.33 BB17
0144ld9_I_DT-59_DC-58NANNANT00.61 BB07
0154ld9_I_DC-58_DT-57NANNANT00.48 BB07
0164ld9_I_DT-57_DG-56NANNANT00.47 BB07
0174ld9_I_DG-56_DA-55B12BB04670.41 BB04
0184ld9_I_DA-55_DC-54B12BB04300.42 BB04
0194ld9_I_DC-54_DA-53NANNANT00.44 BA08
0204ld9_I_DA-53_DC-52A-BAB01240.46 AB01
0214ld9_I_DC-52_DG-51NANNANT00.43 BB01
0224ld9_I_DG-51_DT-50A-BAB01450.39 AB01
0234ld9_I_DT-50_DG-49BBBBB00530.43 BB00
0244ld9_I_DG-49_DC-48BB2BB07620.38 BB07
0254ld9_I_DC-48_DC-47NANNANT00.44 BB10
0264ld9_I_DC-47_DT-46NANNANT00.57 BB07
0274ld9_I_DT-46_DG-45B12BB04680.33 BB04
0284ld9_I_DG-45_DG-44B12BB04780.14 BB04
0294ld9_I_DG-44_DA-43BBBBB00510.30 BB00
0304ld9_I_DA-43_DG-42B12BB04590.31 BB04
0314ld9_I_DG-42_DA-41BBwBB02400.29 BB02
0324ld9_I_DA-41_DC-40BBBBB00750.23 BB00
0334ld9_I_DC-40_DT-39B12BB04620.31 BB04
0344ld9_I_DT-39_DA-38BBBBB00680.32 BB00
0354ld9_I_DA-38_DG-37BBBBB00570.27 BB00
0364ld9_I_DG-37_DG-36BB2BB07190.31 BB07
0374ld9_I_DG-36_DG-35NANNANT00.45 BB04
0384ld9_I_DG-35_DA-34miBBB10340.38 BB10
0394ld9_I_DA-34_DG-33BB2BB07410.21 BB07
0404ld9_I_DG-33_DT-32NANNANT00.27 BB02
0414ld9_I_DT-32_DA-31B12BB04290.22 BB04
0424ld9_I_DA-31_DA-30B12BB04370.17 BB04
0434ld9_I_DA-30_DT-29BBBBB00660.33 BB00
0444ld9_I_DT-29_DC-28BBBBB00190.26 BB00
0454ld9_I_DC-28_DC-27NANNANT00.47 BB07
0464ld9_I_DC-27_DC-26NANNANT00.52 BA17
0474ld9_I_DC-26_DC-25BBBBB00220.42 BB00
0484ld9_I_DC-25_DT-24B-ABA17670.26 BA17
0494ld9_I_DT-24_DT-23B-ABA05810.23 BA05
0504ld9_I_DT-23_DG-22B-ABA05680.22 BA05
0514ld9_I_DG-22_DG-21miBBB10420.28 BB10
0524ld9_I_DG-21_DC-20miBBB10880.24 BB10
0534ld9_I_DC-20_DG-19BBBBB00570.28 BB00
0544ld9_I_DG-19_DG-18B-ABA17720.36 BA17
0554ld9_I_DG-18_DT-17BBBBB01130.27 BB01
0564ld9_I_DT-17_DT-16BBBBB00640.28 BB00
0574ld9_I_DT-16_DA-15BB2BB07340.46 BB07
0584ld9_I_DA-15_DA-14BBBBB00530.22 BB00
0594ld9_I_DA-14_DA-13B12BB04670.20 BB04
0604ld9_I_DA-13_DA-12BBBBB00540.26 BB00
0614ld9_I_DA-12_DC-11BBBBB01530.26 BB01
0624ld9_I_DC-11_DG-10B12BB04120.24 BB04
0634ld9_I_DG-10_DC-9B12BB04200.39 BB04
0644ld9_I_DC-9_DG-8B12BB04460.32 BB04
0654ld9_I_DG-8_DG-7NANNANT00.29 BB10
0664ld9_I_DG-7_DG-6BB2BB07570.31 BB07
0674ld9_I_DG-6_DG-5miBBB10280.31 BB10
0684ld9_I_DG-5_DG-4BB2BB07720.26 BB07
0694ld9_I_DG-4_DA-3BBBBB00750.47 BB00
0704ld9_I_DA-3_DC-2NANNANT00.37 BB17
0714ld9_I_DC-2_DA-1NANNANT00.59 BB10
0724ld9_I_DA-1_DG0BBBBB00500.23 BB00
0734ld9_I_DG0_DC1BBBBB01470.25 BB01
0744ld9_I_DC1_DG2miBBB10540.22 BB10
0754ld9_I_DG2_DC3B12BB04710.16 BB04
0764ld9_I_DC3_DG4miBBB10770.29 BB10
0774ld9_I_DG4_DT5BBBBB00280.26 BB00
0784ld9_I_DT5_DA6BB2BB07560.24 BB07
0794ld9_I_DA6_DC7NANNANT00.30 BB05
0804ld9_I_DC7_DG8BBBBB00490.36 BB00
0814ld9_I_DG8_DT9BBBBB00860.25 BB00
0824ld9_I_DT9_DG10BBBBB00610.41 BB00
0834ld9_I_DG10_DC11NANNANT00.80 BB12
0844ld9_I_DC11_DG12A-BAB05250.41 AB05
0854ld9_I_DG12_DT13BBBBB00200.50 BB00
0864ld9_I_DT13_DT14BBBBB01520.24 BB01
0874ld9_I_DT14_DT15BBBBB00210.33 BB00
0884ld9_I_DT15_DA16BBBBB00460.33 BB00
0894ld9_I_DA16_DA17BB2BB07320.27 BB07
0904ld9_I_DA17_DG18BBBBB01470.23 BB01
0914ld9_I_DG18_DC19BBBBB00190.20 BB00
0924ld9_I_DC19_DG20B12BB04330.33 BB04
0934ld9_I_DG20_DG21B-ABA01310.28 BA01
0944ld9_I_DG21_DT22A-BAB01290.44 AB01
0954ld9_I_DT22_DG23miBBB10740.21 BB10
0964ld9_I_DG23_DC24BBwBB17710.32 BB17
0974ld9_I_DC24_DT25BB2BB07480.27 BB07
0984ld9_I_DT25_DA26BB2BB07330.34 BB07
0994ld9_I_DA26_DG27BBBBB00490.30 BB00
1004ld9_I_DG27_DA28B12BB04220.27 BB04
1014ld9_I_DA28_DG29B12BB04570.30 BB04
1024ld9_I_DG29_DC30miBBB10680.34 BB10
1034ld9_I_DC30_DT31BBwBB17290.34 BB17
1044ld9_I_DT31_DG32BBBBB00310.28 BB00
1054ld9_I_DG32_DT33BBBBB00600.34 BB00
1064ld9_I_DT33_DC34BBBBB00550.26 BB00
1074ld9_I_DC34_DT35miBBB10710.34 BB10
1084ld9_I_DT35_DA36BB2BB07220.29 BB07
1094ld9_I_DA36_DC37B12BB04520.26 BB04
1104ld9_I_DC37_DG38B12BB04720.24 BB04
1114ld9_I_DG38_DA39BBBBB00610.50 BB00
1124ld9_I_DA39_DC40B-ABA05790.23 BA05
1134ld9_I_DC40_DC41BBBBB01640.24 BB01
1144ld9_I_DC41_DA42BBBBB00360.46 BB00
1154ld9_I_DA42_DA43BBwBB17890.36 BB17
1164ld9_I_DA43_DT44BBwBB17470.42 BB17
1174ld9_I_DT44_DT45BBBBB00910.21 BB00
1184ld9_I_DT45_DG46BB2BB07110.45 BB07
1194ld9_I_DG46_DA47BB2BB07560.34 BB07
1204ld9_I_DA47_DG48BBBBB00470.26 BB00
1214ld9_I_DG48_DC49B12BB04320.24 BB04
1224ld9_I_DC49_DG50BBBBB00340.37 BB00
1234ld9_I_DG50_DG51miBBB10760.18 BB10
1244ld9_I_DG51_DC52BBBBB00520.27 BB00
1254ld9_I_DC52_DC53BBBBB00610.30 BB00
1264ld9_I_DC53_DT54BBBBB00740.34 BB00
1274ld9_I_DT54_DC55BBBBB00170.40 BB00
1284ld9_I_DC55_DG56BB2BB07200.39 BB07
1294ld9_I_DG56_DG57B12BB04640.35 BB04
1304ld9_I_DG57_DC58BBBBB00830.20 BB00
1314ld9_I_DC58_DA59BB2BB07670.18 BB07
1324ld9_I_DA59_DC60BBBBB00670.33 BB00
1334ld9_I_DC60_DC61BBBBB00570.31 BB00
1344ld9_I_DC61_DG62BBBBB00710.25 BB00
1354ld9_I_DG62_DG63B12BB04300.28 BB04
1364ld9_I_DG63_DG64BBBBB00560.32 BB00
1374ld9_I_DG64_DA65miBBB10410.36 BB10
1384ld9_I_DA65_DT66NANNANT00.39 BB17
1394ld9_I_DT66_DT67NANNANT00.55 AB03
1404ld9_I_DT67_DC68BBwBB17580.24 BB17
1414ld9_I_DC68_DT69BB2BB07120.39 BB07
1424ld9_I_DT69_DG70NANNANT00.37 BB00
1434ld9_J_DA-69_DG-68BBBBB00310.49 BB00
1444ld9_J_DG-68_DA-67NANNANT00.40 BB07
1454ld9_J_DA-67_DA-66BBBBB00390.24 BB00
1464ld9_J_DA-66_DT-65BBBBB00780.16 BB00
1474ld9_J_DT-65_DC-64B12BB04470.28 BB04
1484ld9_J_DC-64_DC-63BBBBB00810.30 BB00
1494ld9_J_DC-63_DC-62NANNANT00.38 BB10
1504ld9_J_DC-62_DG-61A-BAB01110.39 AB01
1514ld9_J_DG-61_DG-60BBBBB00680.29 BB00
1524ld9_J_DG-60_DT-59miBBB10920.23 BB10
1534ld9_J_DT-59_DG-58BB2BB07100.45 BB07
1544ld9_J_DG-58_DC-57miBBB14720.29 BB14
1554ld9_J_DC-57_DC-56miBBB10490.27 BB10
1564ld9_J_DC-56_DG-55BB2BB07770.25 BB07
1574ld9_J_DG-55_DA-54B12BB04170.36 BB04
1584ld9_J_DA-54_DG-53NANNANT00.54 BB07
1594ld9_J_DG-53_DG-52miBBB10460.32 BB10
1604ld9_J_DG-52_DC-51miBBB10730.33 BB10
1614ld9_J_DC-51_DC-50BBwBB17400.36 BB17
1624ld9_J_DC-50_DG-49miBBB10530.33 BB10
1634ld9_J_DG-49_DC-48B-ABA08460.35 BA08
1644ld9_J_DC-48_DT-47BBBBB00200.35 BB00
1654ld9_J_DT-47_DC-46NANNANT00.30 BB07
1664ld9_J_DC-46_DA-45B12BB04490.34 BB04
1674ld9_J_DA-45_DA-44B12BB04820.18 BB04
1684ld9_J_DA-44_DT-43BBBBB00600.26 BB00
1694ld9_J_DT-43_DT-42BBBBB00770.23 BB00
1704ld9_J_DT-42_DG-41BBBBB00160.23 BB00
1714ld9_J_DG-41_DG-40BBBBB00220.49 BB00
1724ld9_J_DG-40_DT-39NANNANT00.55 BB00
1734ld9_J_DT-39_DC-38miBBB10680.28 BB10
1744ld9_J_DC-38_DG-37BBwBB17570.40 BB17
1754ld9_J_DG-37_DT-36NANNANT00.36 BB07
1764ld9_J_DT-36_DA-35BB2BB07280.28 BB07
1774ld9_J_DA-35_DG-34NANNANT00.38 BB00
1784ld9_J_DG-34_DA-33miBBB10370.38 BB10
1794ld9_J_DA-33_DC-32miBBB14610.34 BB14
1804ld9_J_DC-32_DA-31miBBB10840.30 BB10
1814ld9_J_DA-31_DG-30miBBB10320.25 BB10
1824ld9_J_DG-30_DC-29BBBBB01350.36 BB01
1834ld9_J_DC-29_DT-28BBwBB17570.26 BB17
1844ld9_J_DT-28_DC-27NANNANT00.44 BB04
1854ld9_J_DC-27_DT-26NANNANT00.44 BB07
1864ld9_J_DT-26_DA-25BBBBB00660.31 BB00
1874ld9_J_DA-25_DG-24miBBB10570.37 BB10
1884ld9_J_DG-24_DC-23B12BB04570.27 BB04
1894ld9_J_DC-23_DA-22BBwBB02250.36 BB02
1904ld9_J_DA-22_DC-21B-ABA08340.46 BA08
1914ld9_J_DC-21_DC-20miBBB14530.31 BB14
1924ld9_J_DC-20_DG-19NANNANT00.54 BB10
1934ld9_J_DG-19_DC-18NANNANT00.58 BB10
1944ld9_J_DC-18_DT-17NANNANT00.38 BB10
1954ld9_J_DT-17_DT-16NANNANT00.39 AB02
1964ld9_J_DT-16_DA-15BB2BB07570.28 BB07
1974ld9_J_DA-15_DA-14miBBB10820.27 BB10
1984ld9_J_DA-14_DA-13BBBBB00710.27 BB00
1994ld9_J_DA-13_DC-12B-ABA0580.29 BA05
2004ld9_J_DC-12_DG-11A-BAB03380.36 AB03
2014ld9_J_DG-11_DC-10BBBBB01670.28 BB01
2024ld9_J_DC-10_DA-9BBwBB17630.33 BB17
2034ld9_J_DA-9_DC-8miBBB10480.23 BB10
2044ld9_J_DC-8_DG-7B12BB04460.28 BB04
2054ld9_J_DG-7_DT-6BB2BB07700.18 BB07
2064ld9_J_DT-6_DA-5BB2BB07360.41 BB07
2074ld9_J_DA-5_DC-4B-ABA17660.30 BA17
2084ld9_J_DC-4_DG-3BBBBB00160.43 BB00
2094ld9_J_DG-3_DC-2BBBBB00840.23 BB00
2104ld9_J_DC-2_DG-1B12BB04560.18 BB04
2114ld9_J_DG-1_DC0BBwBB02440.29 BB02
2124ld9_J_DC0_DT1BBBBB00470.25 BB00
2134ld9_J_DT1_DG2miBBB10760.28 BB10
2144ld9_J_DG2_DT3BBBBB00310.31 BB00
2154ld9_J_DT3_DC4miBBB10790.30 BB10
2164ld9_J_DC4_DC5miBBB10470.35 BB10
2174ld9_J_DC5_DC6NANNANT00.28 BB07
2184ld9_J_DC6_DC7B12BB04770.21 BB04
2194ld9_J_DC7_DC8B12BB04890.21 BB04
2204ld9_J_DC8_DG9BBBBB00750.29 BB00
2214ld9_J_DG9_DC10BBBBB00390.24 BB00
2224ld9_J_DC10_DG11BBBBB00850.18 BB00
2234ld9_J_DG11_DT12miBBB10510.43 BB10
2244ld9_J_DT12_DT13BBBBB00750.25 BB00
2254ld9_J_DT13_DT14BBBBB00800.16 BB00
2264ld9_J_DT14_DT15B12BB04310.32 BB04
2274ld9_J_DT15_DA16BBBBB00360.27 BB00
2284ld9_J_DA16_DA17NANNANT00.34 BB07
2294ld9_J_DA17_DC18miBBB15180.33 BB15
2304ld9_J_DC18_DC19BBBBB00600.19 BB00
2314ld9_J_DC19_DG20BBBBB00510.37 BB00
2324ld9_J_DG20_DC21B-ABA08840.27 BA08
2334ld9_J_DC21_DC22A-BAB01450.35 AB01
2344ld9_J_DC22_DA23miBBB10800.21 BB10
2354ld9_J_DA23_DA24BBwBB17490.37 BB17
2364ld9_J_DA24_DG25B12BB04170.28 BB04
2374ld9_J_DG25_DG26BB2BB07250.50 BB07
2384ld9_J_DG26_DG27BBBBB00410.37 BB00
2394ld9_J_DG27_DG28BB2BB07590.24 BB07
2404ld9_J_DG28_DA29BBBBB00570.26 BB00
2414ld9_J_DA29_DT30miBBB10590.38 BB10
2424ld9_J_DT30_DT31BBBBB00220.28 BB00
2434ld9_J_DT31_DA32miBBB10470.21 BB10
2444ld9_J_DA32_DC33B12BB04470.27 BB04
2454ld9_J_DC33_DT34NANNANT00.47 BB10
2464ld9_J_DT34_DC35miBBB14540.29 BB14
2474ld9_J_DC35_DC36NANNANT00.42 BA17
2484ld9_J_DC36_DC37A-BAB03650.33 AB03
2494ld9_J_DC37_DT38B12BB04220.31 BB04
2504ld9_J_DT38_DA39B12BB04780.17 BB04
2514ld9_J_DA39_DG40miBBB15400.30 BB15
2524ld9_J_DG40_DT41BBBBB00760.23 BB00
2534ld9_J_DT41_DC42B-ABA05720.17 BA05
2544ld9_J_DC42_DT43A-BAB0190.37 AB01
2554ld9_J_DT43_DC44BBBBB00600.33 BB00
2564ld9_J_DC44_DC45BBBBB00870.21 BB00
2574ld9_J_DC45_DA46B12BB04140.39 BB04
2584ld9_J_DA46_DG47BB2BB07140.43 BB07
2594ld9_J_DG47_DG48BBBBB00710.34 BB00
2604ld9_J_DG48_DC49BBBBB00560.30 BB00
2614ld9_J_DC49_DA50NANNANT00.38 BB00
2624ld9_J_DA50_DC51NANNANT00.32 BB02
2634ld9_J_DC51_DG52B-ABA08330.32 BA08
2644ld9_J_DG52_DT53A-BAB01200.28 AB01
2654ld9_J_DT53_DG54NANNANT00.67 BB10
2664ld9_J_DG54_DT55NANNANT00.69 BB14
2674ld9_J_DT55_DC56NANNANT00.50 BB00
2684ld9_J_DC56_DA57BB2BB07720.36 BB07
2694ld9_J_DA57_DG58BBBBB00430.35 BB00
2704ld9_J_DG58_DA59B12BB04740.37 BB04
2714ld9_J_DA59_DT60BBBBB00170.41 BB00
2724ld9_J_DT60_DA61BBBBB00290.32 BB00
2734ld9_J_DA61_DT62NANNANT00.40 BB07
2744ld9_J_DT62_DA63miBBB10600.51 BB10
2754ld9_J_DA63_DT64BBBBB00450.40 BB00
2764ld9_J_DT64_DA65BBBBB00750.24 BB00
2774ld9_J_DA65_DC66BBBBB00400.26 BB00
2784ld9_J_DC66_DA67BB2BB07400.27 BB07
2794ld9_J_DA67_DT68B-ABA10540.35 BA10
2804ld9_J_DT68_DC69NANNANT00.47 AB03
2814ld9_J_DC69_DG70BBBBB00860.25 BB00
2824ld9_J_DG70_DA71BBBBB00410.25 BB00
2834ld9_J_DA71_DT72BBBBB00200.30 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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