Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Runx1 and Ets1 bound to TCR alpha promoter (crystal form 2)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4l0z_C_DG1_DG2 | NAN | NANT | 0 | 0.39 |
| 02 | 4l0z_C_DG2_DA3 | BB2 | BB07 | 50 | 0.21 |
| 03 | 4l0z_C_DA3_DA4 | BBB | BB00 | 80 | 0.24 |
| 04 | 4l0z_C_DA4_DG5 | BBw | BB02 | 71 | 0.28 |
| 05 | 4l0z_C_DG5_DC6 | BBB | BB00 | 46 | 0.27 |
| 06 | 4l0z_C_DC6_DC7 | BBB | BB01 | 59 | 0.17 |
| 07 | 4l0z_C_DC7_DA8 | BBw | BB02 | 27 | 0.39 |
| 08 | 4l0z_C_DA8_DC9 | miB | BB12 | 35 | 0.25 |
| 09 | 4l0z_C_DC9_DA10 | BBw | BB16 | 75 | 0.38 |
| 10 | 4l0z_C_DA10_DT11 | BBw | BB02 | 94 | 0.12 |
| 11 | 4l0z_C_DT11_DC12 | miB | BB15 | 68 | 0.33 |
| 12 | 4l0z_C_DC12_DC13 | miB | BB10 | 17 | 0.39 |
| 13 | 4l0z_C_DC13_DT14 | B12 | BB04 | 55 | 0.31 |
| 14 | 4l0z_C_DT14_DC15 | NAN | NANT | 0 | 0.59 |
| 15 | 4l0z_C_DC15_DT16 | BBB | BB00 | 35 | 0.38 |
| 16 | 4l0z_D_DC101_DA102 | BBw | BB16 | 42 | 0.46 |
| 17 | 4l0z_D_DA102_DG103 | BBB | BB00 | 72 | 0.22 |
| 18 | 4l0z_D_DG103_DA104 | BBw | BB02 | 10 | 0.57 |
| 19 | 4l0z_D_DA104_DG105 | BBw | BB02 | 46 | 0.40 |
| 20 | 4l0z_D_DG105_DG106 | BBB | BB00 | 66 | 0.33 |
| 21 | 4l0z_D_DG106_DA107 | BBB | BB00 | 78 | 0.19 |
| 22 | 4l0z_D_DA107_DT108 | BBB | BB00 | 86 | 0.26 |
| 23 | 4l0z_D_DT108_DG109 | B12 | BB04 | 72 | 0.24 |
| 24 | 4l0z_D_DG109_DT110 | BBB | BB00 | 64 | 0.30 |
| 25 | 4l0z_D_DT110_DG111 | BBB | BB00 | 70 | 0.25 |
| 26 | 4l0z_D_DG111_DG112 | B12 | BB04 | 71 | 0.20 |
| 27 | 4l0z_D_DG112_DC113 | BBB | BB00 | 20 | 0.31 |
| 28 | 4l0z_D_DC113_DT114 | B12 | BB04 | 68 | 0.27 |
| 29 | 4l0z_D_DT114_DT115 | BBw | BB02 | 56 | 0.22 |
| 30 | 4l0z_D_DT115_DC116 | NAN | NANT | 0 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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