DNATCO v4.1: results

Crystal structure of an RNA aptamer in complex with fluorophore and Fab

Results of the assignment of 83 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	4kzd_R_GDP1_G2	NAN	NANT	0	0.50	AA04
02	4kzd_R_G2_A3	AAA	AA00	97	0.10	AA00
03	4kzd_R_A3_C4	AAA	AA00	86	0.12	AA00
04	4kzd_R_C4_G5	AAA	AA00	61	0.15	AA00
05	4kzd_R_G5_C6	AAA	AA00	84	0.11	AA00
06	4kzd_R_C6_G7	AAA	AA00	89	0.16	AA00
07	4kzd_R_G7_A8	AAA	AA00	93	0.13	AA00
08	4kzd_R_A8_C9	AAA	AA00	93	0.12	AA00
09	4kzd_R_C9_C10	AAA	AA00	89	0.18	AA00
10	4kzd_R_C10_G11	AAA	AA00	76	0.23	AA00
11	4kzd_R_G11_A12	AAA	AA00	68	0.30	AA00
12	4kzd_R_A12_A13	AAu	AA12	91	0.30	AA12
13	4kzd_R_A13_A14	AAA	AA08	10	0.56	AA08
14	4kzd_R_A14_U15	AAA	AA00	90	0.19	AA00
15	4kzd_R_U15_G16	AAA	AA00	73	0.24	AA00
16	4kzd_R_G16_G17	AAA	AA00	79	0.17	AA00
17	4kzd_R_G17_U18	AAA	AA00	78	0.32	AA00
18	4kzd_R_U18_G19	A-B	AB05	81	0.23	AB05
19	4kzd_R_G19_A20	B-A	BA13	47	0.34	BA13
20	4kzd_R_A20_A21	AAA	AA00	94	0.13	AA00
21	4kzd_R_A21_G22	ICL	IC01	84	0.23	IC01
22	4kzd_R_G22_G23	BB2	BB07	30	0.34	BB07
23	4kzd_R_G23_A24	NAN	NANT	0	0.69	OP21
24	4kzd_R_A24_C25	NAN	NANT	0	0.81	OP21
25	4kzd_R_C25_G26	AAw	AA06	75	0.27	AA06
26	4kzd_R_G26_G27	AAA	AA08	97	0.17	AA08
27	4kzd_R_G27_G28	AAA	AA00	86	0.19	AA00
28	4kzd_R_G28_U29	AAA	AA00	78	0.20	AA00
29	4kzd_R_U29_C30	AAA	AA08	82	0.24	AA08
30	4kzd_R_C30_C31	AAA	AA00	80	0.24	AA00
31	4kzd_R_C31_A32	AAA	AA00	61	0.19	AA00
32	4kzd_R_A32_G33	AAA	AA00	76	0.15	AA00
33	4kzd_R_G33_U34	AAA	AA00	91	0.10	AA00
34	4kzd_R_U34_G35	AAA	AA00	84	0.11	AA00
35	4kzd_R_G35_C36	AAA	AA00	85	0.23	AA00
36	4kzd_R_C36_G37	AAA	AA00	56	0.31	AA00
37	4kzd_R_G37_A38	NAN	NANT	0	0.67	OP05
38	4kzd_R_A38_A39	NAN	NANT	0	0.74	OP20
39	4kzd_R_A39_A40	NAN	NANT	0	0.57	OP13
40	4kzd_R_A40_C41	OPN	OP12	68	0.29	OP12
41	4kzd_R_C41_A42	AAA	AA00	71	0.32	AA00
42	4kzd_R_A42_C43	AAA	AA00	75	0.30	AA00
43	4kzd_R_C43_G44	AAA	AA00	89	0.14	AA00
44	4kzd_R_G44_C45	AAA	AA00	94	0.14	AA00
45	4kzd_R_C45_A46	AAA	AA00	87	0.11	AA00
46	4kzd_R_A46_C47	AAA	AA00	95	0.13	AA00
47	4kzd_R_C47_U48	AAA	AA00	86	0.18	AA00
48	4kzd_R_U48_G49	AAA	AA08	87	0.15	AA08
49	4kzd_R_G49_U50	ICL	IC01	54	0.24	IC01
50	4kzd_R_U50_U51	NAN	NANT	0	0.74	OP21
51	4kzd_R_U51_G52	OPN	OP31	27	0.66	OP31
52	4kzd_R_G52_A53	A-B	AB04	81	0.22	AB04
53	4kzd_R_A53_G54	NAN	NANT	0	1.25	BB2S
54	4kzd_R_G54_U55	NAN	NANT	0	1.65	OPS1
55	4kzd_R_U55_A56	NAN	NANT	0	0.93	OP13
56	4kzd_R_A56_G57	NAN	NANT	0	1.04	OP17
57	4kzd_R_G57_A58	NAN	NANT	0	0.73	OP04
58	4kzd_R_A58_G59	NAN	NANT	0	1.48	BB1S
59	4kzd_R_G59_U60	NAN	NANT	0	1.67	OP25
60	4kzd_R_U60_G61	NAN	NANT	0	1.37	OP16
61	4kzd_R_G61_U62	NAN	NANT	0	1.89	OPS1
62	4kzd_R_U62_G63	NAN	NANT	0	0.39	OP07
63	4kzd_R_G63_A64	AAA	AA00	69	0.19	AA00
64	4kzd_R_A64_G65	AAA	AA00	70	0.29	AA00
65	4kzd_R_G65_C66	AAA	AA08	78	0.25	AA08
66	4kzd_R_C66_U67	AAA	AA03	63	0.28	AA03
67	4kzd_R_U67_C68	AAA	AA08	72	0.28	AA08
68	4kzd_R_C68_C69	AAA	AA00	43	0.34	AA00
69	4kzd_R_C69_G70	AAw	AA01	81	0.17	AA01
70	4kzd_R_G70_U71	AAA	AA00	58	0.22	AA00
71	4kzd_R_U71_A72	AAA	AA08	79	0.33	AA08
72	4kzd_R_A72_A73	AAu	AA12	83	0.33	AA12
73	4kzd_R_A73_C74	AAA	AA08	28	0.60	AA08
74	4kzd_R_C74_U75	NAN	NANT	0	1.73	OP01
75	4kzd_R_U75_G76	NAN	NANT	0	1.59	OP29
76	4kzd_R_G76_G77	AAA	AA00	74	0.13	AA00
77	4kzd_R_G77_U78	AAA	AA00	97	0.11	AA00
78	4kzd_R_U78_C79	AAA	AA00	82	0.10	AA00
79	4kzd_R_C79_G80	AAA	AA00	92	0.10	AA00
80	4kzd_R_G80_C81	AAA	AA00	87	0.13	AA00
81	4kzd_R_C81_G82	AAA	AA00	93	0.12	AA00
82	4kzd_R_G82_U83	AAA	AA00	93	0.17	AA00
83	4kzd_R_U83_C84	AAA	AA00	96	0.13	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 83 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible