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Conformers: ABBIImiBZICOPNSYNN
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DNA polymerase beta matched product complex with Mg2+, 40 s

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014klg_T_DC1_DC2BBBBB00300.33 BB00
024klg_T_DC2_DG3BB2BB07660.16 BB07
034klg_T_DG3_DA4BBBBB00190.15 BB00
044klg_T_DA4_DC5miBBB15760.15 BB15
054klg_T_DC5_DG6NANNANT01.32 OP21
064klg_T_DG6_DG7miBBB15410.24 BB15
074klg_T_DG7_DC8BBBBB00440.36 BB00
084klg_T_DC8_DG9B12BB04520.32 BB04
094klg_T_DG9_DC10BBBBB00700.22 BB00
104klg_T_DC10_DA11BBBBB00880.20 BB00
114klg_T_DA11_DT12BBBBB01850.17 BB01
124klg_T_DT12_DC13BBBBB00550.21 BB00
134klg_T_DC13_DA14B12BB04610.20 BB04
144klg_T_DA14_DG15BBBBB00780.17 BB00
154klg_T_DG15_DC16miBBB15750.21 BB15
164klg_P_DG1_DC2BBBBB01290.26 BB01
174klg_P_DC2_DT3BBBBB00720.16 BB00
184klg_P_DT3_DG4BBBBB00860.17 BB00
194klg_P_DG4_DA5BBBBB00820.21 BB00
204klg_P_DA5_DT6BBBBB01880.17 BB01
214klg_P_DT6_DG7BBBBB00590.25 BB00
224klg_P_DG7_DC8B-ABA05790.10 BA05
234klg_P_DC8_DG9NANNANT00.37 BA05
244klg_P_DG9_DC10AAAAA00570.27 AA00
254klg_P_DC10_DC11AAAAA00820.18 AA00
264klg_D_DG1_DT2BBBBB01810.18 BB01
274klg_D_DT2_DC3BBBBB01850.15 BB01
284klg_D_DC3_DG4BBBBB00360.26 BB00
294klg_D_DG4_DG5miBBB15700.21 BB15

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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