Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014khn_C_DT1_DC2OPNOP21370.49 OP21
024khn_C_DC2_DA3NANNANT01.59 BB1S
034khn_C_DA3_DC4NANNANT01.51 OP17
044khn_C_DC4_DG5AAAAA00910.19 AA00
054khn_C_DG5_DT6A-BAB05820.26 AB05
064khn_C_DT6_DA7BBBBB00720.25 BB00
074khn_C_DA7_DA8BBBBB00770.27 BB00
084khn_C_DA8_DG9BB2BB07150.36 BB07
094khn_C_DG9_DC10BBBBB00360.27 BB00
104khn_C_DC10_DA11BBBBB00680.29 BB00
114khn_C_DA11_DG12B-ABA05900.20 BA05
124khn_C_DG12_DT13BBBBB00200.34 BB00
134khn_C_DT13_DC14BBBBB01920.17 BB01
144khn_C_DC14_DC15BBBBB00770.19 BB00
154khn_C_DC15_DG16B12BB04170.21 BB04
164khn_C_DG16_DC17BBBBB00820.15 BB00
174khn_C_DC17_DG18NANNANT00.57 BB13
184khn_D_DG103_DC104BBBBB00220.26 BB00
194khn_D_DC104_DG105BBBBB00630.27 BB00
204khn_D_DG105_DG106BBBBB00840.20 BB00
214khn_D_DG106_DA107BBBBB00940.14 BB00
224khn_D_DA107_DC108B-ABA01850.24 BA01
234khn_D_DC108_DT109A-BAB01870.29 AB01
244khn_D_DT109_DG110BBBBB01910.21 BB01
254khn_D_DG110_DC111B-ABA05820.19 BA05
264khn_D_DC111_DT112B-ABA05200.25 BA05
274khn_D_DT112_DT113B-ABA05220.44 BA05
284khn_D_DT113_DA114A-BAB01360.34 AB01
294khn_D_DA114_DC115B-ABA05810.10 BA05
304khn_E_DT1_DC2OPNOP21420.37 OP21
314khn_E_DC2_DA3NANNANT00.79 BB04
324khn_E_DA3_DC4NANNANT01.53 IC07
334khn_E_DC4_DG5AAAAA00920.19 AA00
344khn_E_DG5_DT6A-BAB05850.23 AB05
354khn_E_DT6_DA7BBBBB00770.24 BB00
364khn_E_DA7_DA8BBBBB00820.26 BB00
374khn_E_DA8_DG9B-ABA08600.29 BA08
384khn_E_DG9_DC10BBBBB00190.37 BB00
394khn_E_DC10_DA11BBBBB00800.26 BB00
404khn_E_DA11_DG12B-ABA05880.18 BA05
414khn_E_DG12_DT13BBBBB00200.28 BB00
424khn_E_DT13_DC14BBBBB00820.21 BB00
434khn_E_DC14_DC15BBwBB02630.26 BB02
444khn_E_DC15_DG16BBBBB00900.28 BB00
454khn_E_DG16_DC17BBBBB01630.20 BB01
464khn_E_DC17_DG18A-BAB03530.31 AB03
474khn_F_DG103_DC104B12BB04450.23 BB04
484khn_F_DC104_DG105BBBBB00820.22 BB00
494khn_F_DG105_DG106B12BB04890.15 BB04
504khn_F_DG106_DA107BBBBB00890.18 BB00
514khn_F_DA107_DC108B-ABA01740.25 BA01
524khn_F_DC108_DT109A-BAB01480.27 AB01
534khn_F_DT109_DG110BBBBB01830.20 BB01
544khn_F_DG110_DC111B-ABA05840.17 BA05
554khn_F_DC111_DT112B-ABA05370.28 BA05
564khn_F_DT112_DT113AAAAA02240.50 AA02
574khn_F_DT113_DA114A-BAB03390.41 AB03
584khn_F_DA114_DC115BBBBB01520.32 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N