Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
A low-resolution three-gate structure of topoisomerase IV from Streptococcus pneumoniae in space group H32
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4juo_E_DC.A9_DA.A10 | NAN | NANT | 0 | 0.56 |
| 02 | 4juo_E_DA.A10_DT.A11 | NAN | NANT | 0 | 0.47 |
| 03 | 4juo_E_DT.A11_DG.A12 | BBB | BB00 | 10 | 0.71 |
| 04 | 4juo_E_DG.A12_DA.A13 | BB2 | BB08 | 81 | 0.24 |
| 05 | 4juo_E_DA.A13_DA.A14 | NAN | NANT | 0 | 0.49 |
| 06 | 4juo_E_DA.A14_DT.A15 | AAA | AA00 | 52 | 0.22 |
| 07 | 4juo_F_DA.A1_DG.A2 | BB2 | BB07 | 76 | 0.38 |
| 08 | 4juo_F_DG.A2_DT.A3 | NAN | NANT | 0 | 0.64 |
| 09 | 4juo_F_DT.A3_DC.A4 | NAN | NANT | 0 | 0.36 |
| 10 | 4juo_F_DC.A4_DA.A5 | NAN | NANT | 0 | 0.72 |
| 11 | 4juo_F_DA.A5_DT.A6 | B-A | BA08 | 56 | 0.36 |
| 12 | 4juo_F_DT.A6_DT.A7 | A-B | AB04 | 26 | 0.41 |
| 13 | 4juo_F_DT.A7_DC.A8 | NAN | NANT | 0 | 0.51 |
| 14 | 4juo_F_DC.A8_DA.A9 | NAN | NANT | 0 | 0.43 |
| 15 | 4juo_F_DA.A9_DT.A10 | B-A | BA05 | 80 | 0.25 |
| 16 | 4juo_F_DT.A10_DG.A11 | NAN | NANT | 0 | 0.45 |
| 17 | 4juo_G_DC.B9_DG.B10 | BBB | BB00 | 65 | 0.38 |
| 18 | 4juo_G_DG.B10_DT.B11 | B-A | BA05 | 58 | 0.43 |
| 19 | 4juo_G_DT.B11_DG.B12 | NAN | NANT | 0 | 0.45 |
| 20 | 4juo_G_DG.B12_DC.B13 | BB2 | BB08 | 56 | 0.34 |
| 21 | 4juo_G_DC.B13_DA.B14 | NAN | NANT | 0 | 0.44 |
| 22 | 4juo_G_DA.B14_DT.B15 | AAA | AA00 | 68 | 0.18 |
| 23 | 4juo_H_DG.B1_DA.B2 | B12 | BB04 | 36 | 0.21 |
| 24 | 4juo_H_DA.B2_DC.B3 | B-A | BA05 | 32 | 0.27 |
| 25 | 4juo_H_DC.B3_DT.B4 | NAN | NANT | 0 | 0.39 |
| 26 | 4juo_H_DT.B4_DA.B5 | NAN | NANT | 0 | 0.61 |
| 27 | 4juo_H_DA.B5_DT.B6 | NAN | NANT | 0 | 0.39 |
| 28 | 4juo_H_DT.B6_DG.B7 | A-B | AB04 | 66 | 0.27 |
| 29 | 4juo_H_DG.B7_DC.B8 | B-A | BA05 | 14 | 0.44 |
| 30 | 4juo_H_DC.B8_DA.B9 | NAN | NANT | 0 | 0.65 |
| 31 | 4juo_H_DA.B9_DC.B10 | B-A | BA01 | 42 | 0.26 |
| 32 | 4juo_H_DC.B10_DG.B11 | NAN | NANT | 0 | 0.70 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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