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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta-DNA ternary complex: primer extension after a T:G mispair

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014j9o_T_DA2_DC3NANNANT02.65 OP1S
024j9o_T_DC3_DT4NANNANT00.86 OP07
034j9o_T_DT4_DT5BBBBB00690.23 BB00
044j9o_T_DT5_DA6NANNANT00.50 BB02
054j9o_T_DA6_DT7NANNANT00.50 BA10
064j9o_T_DT7_DG8A-BAB01310.33 AB01
074j9o_T_DG8_DA9BBBBB00890.20 BB00
084j9o_T_DA9_DC10NANNANT00.27 BB15
094j9o_T_DC10_DG11BBBBB00860.15 BB00
104j9o_T_DG11_DT12miBBB15860.20 BB15
114j9o_P_DA2_DC3NANNANT00.58 BB16
124j9o_P_DC3_DG4BBBBB01510.29 BB01
134j9o_P_DG4_DT5BBBBB01510.20 BB01
144j9o_P_DT5_DC6BBBBB01820.18 BB01
154j9o_P_DC6_DA7BBBBB01750.19 BB01
164j9o_P_DA7_DT8A-BAB03420.47 AB03
174j9o_P_DT8_DG9NANNANT00.42 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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