Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Multiple crystal structures of an all-AT DNA dodecamer stabilized by weak interactions

Results of the assignment of 88 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014j2i_A_DA1_DA2BBBBB00740.28 BB00
024j2i_A_DA2_DT3BBBBB00420.22 BB00
034j2i_A_DT3_DA4BBBBB00560.25 BB00
044j2i_A_DA4_DA5BBBBB00810.26 BB00
054j2i_A_DA5_DA6BBBBB00390.28 BB00
064j2i_A_DA6_DT7BBBBB00520.34 BB00
074j2i_A_DT7_DT8BBBBB01490.25 BB01
084j2i_A_DT8_DT9BBBBB00710.23 BB00
094j2i_A_DT9_DA10BBBBB00760.23 BB00
104j2i_A_DA10_DT11B12BB04450.23 BB04
114j2i_A_DT11_DT12BBBBB01620.17 BB01
124j2i_B_DA13_DA14BBBBB00780.20 BB00
134j2i_B_DA14_DT15BBBBB00860.23 BB00
144j2i_B_DT15_DA16BBBBB00820.20 BB00
154j2i_B_DA16_DA17BBBBB00780.27 BB00
164j2i_B_DA17_DA18BBBBB00230.26 BB00
174j2i_B_DA18_DT19BBBBB00530.20 BB00
184j2i_B_DT19_DT20BBBBB00690.23 BB00
194j2i_B_DT20_DT21B12BB04360.25 BB04
204j2i_B_DT21_DA22BBBBB00610.23 BB00
214j2i_B_DA22_DT23B12BB04120.36 BB04
224j2i_B_DT23_DT24BBBBB01210.27 BB01
234j2i_C_DA1_DA2BBBBB00300.30 BB00
244j2i_C_DA2_DT3BBBBB00740.30 BB00
254j2i_C_DT3_DA4BBBBB00700.23 BB00
264j2i_C_DA4_DA5B-ABA05830.22 BA05
274j2i_C_DA5_DA6BBBBB01510.27 BB01
284j2i_C_DA6_DT7B-ABA05820.29 BA05
294j2i_C_DT7_DT8BBBBB01450.23 BB01
304j2i_C_DT8_DT9BBBBB01810.14 BB01
314j2i_C_DT9_DA10BBBBB01400.33 BB01
324j2i_C_DA10_DT11BBBBB00680.24 BB00
334j2i_C_DT11_DT12B12BB04560.24 BB04
344j2i_D_DA13_DA14BBBBB00910.10 BB00
354j2i_D_DA14_DT15BBBBB00580.31 BB00
364j2i_D_DT15_DA16BBBBB00600.28 BB00
374j2i_D_DA16_DA17BBBBB00850.19 BB00
384j2i_D_DA17_DA18BBBBB00830.24 BB00
394j2i_D_DA18_DT19BBBBB01700.17 BB01
404j2i_D_DT19_DT20BBBBB00280.32 BB00
414j2i_D_DT20_DT21B12BB04660.35 BB04
424j2i_D_DT21_DA22BBBBB00320.27 BB00
434j2i_D_DA22_DT23BBBBB00380.37 BB00
444j2i_D_DT23_DT24BBBBB01750.18 BB01
454j2i_E_DA1_DA2BBBBB00840.21 BB00
464j2i_E_DA2_DT3BBBBB00930.16 BB00
474j2i_E_DT3_DA4miBBB15570.27 BB15
484j2i_E_DA4_DA5BBBBB00530.40 BB00
494j2i_E_DA5_DA6BBBBB00860.19 BB00
504j2i_E_DA6_DT7B-ABA08670.38 BA08
514j2i_E_DT7_DT8BBBBB01580.20 BB01
524j2i_E_DT8_DT9BBBBB00640.21 BB00
534j2i_E_DT9_DA10B-ABA05360.35 BA05
544j2i_E_DA10_DT11BBBBB00330.28 BB00
554j2i_E_DT11_DT12BBBBB01250.25 BB01
564j2i_F_DA13_DA14BBBBB00690.29 BB00
574j2i_F_DA14_DT15BBBBB01830.17 BB01
584j2i_F_DT15_DA16BBBBB01710.24 BB01
594j2i_F_DA16_DA17BBBBB01620.25 BB01
604j2i_F_DA17_DA18BBBBB00340.25 BB00
614j2i_F_DA18_DT19BBBBB00870.19 BB00
624j2i_F_DT19_DT20BBBBB01190.27 BB01
634j2i_F_DT20_DT21BBBBB01460.22 BB01
644j2i_F_DT21_DA22B-ABA05380.41 BA05
654j2i_F_DA22_DT23BBBBB01290.24 BB01
664j2i_F_DT23_DT24BBBBB00560.26 BB00
674j2i_G_DA1_DA2BBBBB00810.22 BB00
684j2i_G_DA2_DT3BBBBB00800.21 BB00
694j2i_G_DT3_DA4BBBBB01810.15 BB01
704j2i_G_DA4_DA5BBBBB01490.23 BB01
714j2i_G_DA5_DA6BBBBB00260.20 BB00
724j2i_G_DA6_DT7BBBBB01660.19 BB01
734j2i_G_DT7_DT8BBBBB00890.20 BB00
744j2i_G_DT8_DT9B12BB04150.26 BB04
754j2i_G_DT9_DA10B-ABA05650.37 BA05
764j2i_G_DA10_DT11BBBBB01440.16 BB01
774j2i_G_DT11_DT12BBBBB01420.19 BB01
784j2i_H_DA13_DA14BBBBB00910.16 BB00
794j2i_H_DA14_DT15BBBBB00670.23 BB00
804j2i_H_DT15_DA16BBBBB00610.23 BB00
814j2i_H_DA16_DA17BBBBB00850.19 BB00
824j2i_H_DA17_DA18B12BB04690.32 BB04
834j2i_H_DA18_DT19B12BB04160.22 BB04
844j2i_H_DT19_DT20BBBBB00590.25 BB00
854j2i_H_DT20_DT21BBBBB01420.34 BB01
864j2i_H_DT21_DA22BBBBB00570.27 BB00
874j2i_H_DA22_DT23BBBBB00520.26 BB00
884j2i_H_DT23_DT24BBBBB00720.21 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N