Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of ZNF217 bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4is1_A_DT1_DT2 | BBB | BB00 | 22 | 0.28 |
| 02 | 4is1_A_DT2_DT3 | BBB | BB01 | 62 | 0.21 |
| 03 | 4is1_A_DT3_DG4 | BBB | BB01 | 40 | 0.21 |
| 04 | 4is1_A_DG4_DC5 | BBB | BB01 | 41 | 0.37 |
| 05 | 4is1_A_DC5_DA6 | BBB | BB00 | 44 | 0.31 |
| 06 | 4is1_A_DA6_DG7 | BBB | BB00 | 50 | 0.34 |
| 07 | 4is1_A_DG7_DA8 | BB2 | BB07 | 87 | 0.20 |
| 08 | 4is1_A_DA8_DA9 | BBB | BB00 | 80 | 0.25 |
| 09 | 4is1_A_DA9_DT10 | BBB | BB01 | 64 | 0.26 |
| 10 | 4is1_A_DT10_DC11 | BBB | BB00 | 24 | 0.39 |
| 11 | 4is1_A_DC11_DG12 | BB2 | BB07 | 81 | 0.31 |
| 12 | 4is1_A_DG12_DA13 | BBB | BB01 | 74 | 0.21 |
| 13 | 4is1_A_DA13_DT14 | B-A | BA05 | 83 | 0.33 |
| 14 | 4is1_A_DT14_DT15 | A-B | AB01 | 49 | 0.32 |
| 15 | 4is1_A_DT15_DC16 | BBB | BB00 | 88 | 0.18 |
| 16 | 4is1_A_DC16_DT17 | BBB | BB00 | 88 | 0.15 |
| 17 | 4is1_A_DT17_DG18 | BB2 | BB07 | 74 | 0.24 |
| 18 | 4is1_A_DG18_DC19 | BBB | BB00 | 11 | 0.29 |
| 19 | 4is1_A_DC19_DA20 | BBB | BB00 | 31 | 0.31 |
| 20 | 4is1_B_DA1_DA2 | BBB | BB00 | 63 | 0.26 |
| 21 | 4is1_B_DA2_DT3 | BBB | BB01 | 79 | 0.18 |
| 22 | 4is1_B_DT3_DG4 | BBB | BB00 | 33 | 0.29 |
| 23 | 4is1_B_DG4_DC5 | B12 | BB04 | 79 | 0.20 |
| 24 | 4is1_B_DC5_DA6 | BBB | BB00 | 70 | 0.28 |
| 25 | 4is1_B_DA6_DG7 | B12 | BB04 | 82 | 0.24 |
| 26 | 4is1_B_DG7_DA8 | BB2 | BB07 | 46 | 0.25 |
| 27 | 4is1_B_DA8_DA9 | BBB | BB00 | 79 | 0.13 |
| 28 | 4is1_B_DA9_DT10 | B-A | BA05 | 89 | 0.28 |
| 29 | 4is1_B_DT10_DC11 | A-B | AB03 | 85 | 0.26 |
| 30 | 4is1_B_DC11_DG12 | miB | BB10 | 39 | 0.26 |
| 31 | 4is1_B_DG12_DA13 | BB2 | BB07 | 72 | 0.18 |
| 32 | 4is1_B_DA13_DT14 | B-A | BA05 | 44 | 0.41 |
| 33 | 4is1_B_DT14_DT15 | BBB | BB01 | 42 | 0.32 |
| 34 | 4is1_B_DT15_DC16 | BBB | BB00 | 83 | 0.21 |
| 35 | 4is1_B_DC16_DT17 | BBB | BB00 | 93 | 0.18 |
| 36 | 4is1_B_DT17_DG18 | B12 | BB04 | 78 | 0.27 |
| 37 | 4is1_B_DG18_DC19 | B-A | BA05 | 87 | 0.23 |
| 38 | 4is1_B_DC19_DA20 | BBB | BB01 | 50 | 0.24 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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