Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
structure of Polymerase-DNA complex, dna
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4irk_C_DT837_DC838 | BBw | BB16 | 48 | 0.45 |
| 02 | 4irk_C_DC838_DT839 | NAN | NANT | 0 | 0.61 |
| 03 | 4irk_C_DT839_DA840 | NAN | NANT | 0 | 0.75 |
| 04 | 4irk_C_DA840_DG841 | BBB | BB00 | 78 | 0.25 |
| 05 | 4irk_C_DG841_DG842 | BBB | BB00 | 73 | 0.24 |
| 06 | 4irk_C_DG842_DG843 | B-A | BA10 | 87 | 0.23 |
| 07 | 4irk_C_DG843_DT844 | A-B | AB01 | 18 | 0.37 |
| 08 | 4irk_C_DT844_DC845 | BBB | BB01 | 53 | 0.26 |
| 09 | 4irk_C_DC845_DC846 | BBB | BB01 | 24 | 0.22 |
| 10 | 4irk_C_DC846_DT847 | A-B | AB03 | 81 | 0.34 |
| 11 | 4irk_C_DT847_DA848 | miB | BB15 | 40 | 0.28 |
| 12 | 4irk_C_DA848_DG849 | BBB | BB00 | 70 | 0.39 |
| 13 | 4irk_C_DG849_DG850 | BBB | BB00 | 61 | 0.23 |
| 14 | 4irk_C_DG850_DA851 | BB2 | BB07 | 85 | 0.23 |
| 15 | 4irk_C_DA851_DC852 | BBB | BB00 | 60 | 0.14 |
| 16 | 4irk_C_DC852_DC853 | BBB | BB00 | 69 | 0.19 |
| 17 | 4irk_C_DC853_DC854 | NAN | NANT | 0 | 0.45 |
| 18 | 4irk_G_DG860_DG861 | BBB | BB00 | 60 | 0.26 |
| 19 | 4irk_G_DG861_DG862 | BBB | BB00 | 54 | 0.29 |
| 20 | 4irk_G_DG862_DT863 | BBB | BB01 | 20 | 0.13 |
| 21 | 4irk_G_DT863_DC864 | BBB | BB00 | 40 | 0.26 |
| 22 | 4irk_G_DC864_DC865 | BBB | BB00 | 81 | 0.17 |
| 23 | 4irk_G_DC865_DT866 | B-A | BA01 | 51 | 0.28 |
| 24 | 4irk_G_DT866_DA867 | A-B | AB01 | 54 | 0.29 |
| 25 | 4irk_G_DA867_DG868 | BBB | BB01 | 74 | 0.16 |
| 26 | 4irk_G_DG868_DG869 | miB | BB15 | 36 | 0.39 |
| 27 | 4irk_G_DG869_DA870 | BBB | BB01 | 77 | 0.19 |
| 28 | 4irk_G_DA870_DC871 | NAN | NANT | 0 | 0.25 |
| 29 | 4irk_G_DC871_DC872 | NAN | NANT | 0 | 0.35 |
| 30 | 4irk_F_DT837_DC838 | BBB | BB00 | 32 | 0.33 |
| 31 | 4irk_F_DC838_DT839 | NAN | NANT | 0 | 0.56 |
| 32 | 4irk_F_DT839_DA840 | NAN | NANT | 0 | 0.72 |
| 33 | 4irk_F_DA840_DG841 | BBB | BB00 | 76 | 0.20 |
| 34 | 4irk_F_DG841_DG842 | B-A | BA08 | 60 | 0.24 |
| 35 | 4irk_F_DG842_DG843 | AAw | AA01 | 16 | 0.21 |
| 36 | 4irk_F_DG843_DT844 | A-B | AB04 | 65 | 0.32 |
| 37 | 4irk_F_DT844_DC845 | BBB | BB01 | 63 | 0.19 |
| 38 | 4irk_F_DC845_DC846 | BBB | BB00 | 79 | 0.20 |
| 39 | 4irk_F_DC846_DT847 | BBB | BB00 | 78 | 0.17 |
| 40 | 4irk_F_DT847_DA848 | BBB | BB00 | 83 | 0.25 |
| 41 | 4irk_F_DA848_DG849 | B12 | BB04 | 14 | 0.24 |
| 42 | 4irk_F_DG849_DG850 | BBB | BB00 | 34 | 0.14 |
| 43 | 4irk_F_DG850_DA851 | B12 | BB04 | 16 | 0.29 |
| 44 | 4irk_F_DA851_DC852 | BBB | BB00 | 59 | 0.25 |
| 45 | 4irk_F_DC852_DC853 | BBB | BB01 | 78 | 0.17 |
| 46 | 4irk_F_DC853_DC854 | NAN | NANT | 0 | 0.52 |
| 47 | 4irk_H_DG860_DG861 | BBB | BB00 | 45 | 0.45 |
| 48 | 4irk_H_DG861_DG862 | BBB | BB00 | 71 | 0.15 |
| 49 | 4irk_H_DG862_DT863 | BBw | BB17 | 40 | 0.35 |
| 50 | 4irk_H_DT863_DC864 | BBB | BB00 | 72 | 0.29 |
| 51 | 4irk_H_DC864_DC865 | BBB | BB00 | 82 | 0.17 |
| 52 | 4irk_H_DC865_DT866 | BBB | BB01 | 83 | 0.21 |
| 53 | 4irk_H_DT866_DA867 | BBB | BB00 | 45 | 0.29 |
| 54 | 4irk_H_DA867_DG868 | BBB | BB00 | 81 | 0.20 |
| 55 | 4irk_H_DG868_DG869 | BBB | BB00 | 84 | 0.16 |
| 56 | 4irk_H_DG869_DA870 | B12 | BB04 | 76 | 0.14 |
| 57 | 4irk_H_DA870_DC871 | B-A | BA05 | 67 | 0.15 |
| 58 | 4irk_H_DC871_DC872 | AAA | AA00 | 20 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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