Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Auto-inhibited ERG Ets Domain-DNA Complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4iri_B_DG1_DA2 | A-B | AB01 | 12 | 0.32 |
| 02 | 4iri_B_DA2_DC3 | BBB | BB01 | 89 | 0.23 |
| 03 | 4iri_B_DC3_DC4 | BBB | BB01 | 55 | 0.17 |
| 04 | 4iri_B_DC4_DG5 | BBB | BB00 | 11 | 0.35 |
| 05 | 4iri_B_DG5_DG6 | NAN | NANT | 0 | 0.48 |
| 06 | 4iri_B_DG6_DA7 | BBB | BB00 | 24 | 0.26 |
| 07 | 4iri_B_DA7_DA8 | BBB | BB00 | 53 | 0.27 |
| 08 | 4iri_B_DA8_DG9 | miB | BB10 | 70 | 0.34 |
| 09 | 4iri_B_DG9_DT10 | BBB | BB00 | 33 | 0.30 |
| 10 | 4iri_B_DT10_DG11 | BB2 | BB07 | 25 | 0.41 |
| 11 | 4iri_B_DG11_DG12 | NAN | NANT | 0 | 0.51 |
| 12 | 4iri_C_DC13_DC14 | NAN | NANT | 0 | 0.60 |
| 13 | 4iri_C_DC14_DA15 | NAN | NANT | 0 | 0.45 |
| 14 | 4iri_C_DA15_DC16 | miB | BB12 | 50 | 0.25 |
| 15 | 4iri_C_DC16_DT17 | NAN | NANT | 0 | 0.34 |
| 16 | 4iri_C_DT17_DT18 | BBB | BB01 | 88 | 0.19 |
| 17 | 4iri_C_DT18_DC19 | BBB | BB01 | 45 | 0.29 |
| 18 | 4iri_C_DC19_DC20 | NAN | NANT | 0 | 0.41 |
| 19 | 4iri_C_DC20_DG21 | B12 | BB04 | 44 | 0.26 |
| 20 | 4iri_C_DG21_DG22 | NAN | NANT | 0 | 0.53 |
| 21 | 4iri_C_DG22_DT23 | AAA | AA04 | 70 | 0.34 |
| 22 | 4iri_C_DT23_DC24 | AAw | AA01 | 43 | 0.34 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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