DNATCO v4.1: results

A three-gate structure of topoisomerase IV from Streptococcus pneumoniae

Results of the assignment of 64 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	4i3h_E_DA2_DA3	B12	BB04	57	0.27	BB04
02	4i3h_E_DA3_DT4	NAN	NANT	0	0.23	BB10
03	4i3h_E_DT4_DA5	NAN	NANT	0	0.34	BA17
04	4i3h_E_DA5_DC6	B-A	BA05	47	0.34	BA05
05	4i3h_E_DC6_DG7	BBB	BB01	42	0.30	BB01
06	4i3h_E_DG7_DG8	B-A	BA05	28	0.33	BA05
07	4i3h_E_DG8_DT9	B-A	BA05	27	0.48	BA05
08	4i3h_E_DT9_DT10	B-A	BA05	40	0.39	BA05
09	4i3h_E_DT10_DA11	NAN	NANT	0	0.49	BA05
10	4i3h_E_DA11_DT12	NAN	NANT	0	0.75	BB16
11	4i3h_E_DT12_DC13	BBw	BB11	47	0.30	BB11
12	4i3h_E_DC13_DC14	BBB	BB00	7	0.50	BB00
13	4i3h_E_DC14_DA15	NAN	NANT	0	0.33	BB02
14	4i3h_F_DT2_DG3	B12	BB04	54	0.30	BB04
15	4i3h_F_DG3_DG4	NAN	NANT	0	0.42	BB10
16	4i3h_F_DG4_DA5	BBB	BB00	16	0.53	BB00
17	4i3h_F_DA5_DT6	B-A	BA05	53	0.29	BA05
18	4i3h_F_DT6_DA7	BBB	BB01	49	0.32	BB01
19	4i3h_F_DA7_DA8	B-A	BA05	23	0.34	BA05
20	4i3h_F_DA8_DC9	B-A	BA05	40	0.46	BA05
21	4i3h_F_DC9_DC10	B-A	BA05	53	0.35	BA05
22	4i3h_F_DC10_DG11	B-A	BA05	12	0.50	BA05
23	4i3h_F_DG11_DT12	NAN	NANT	0	0.77	BB16
24	4i3h_F_DT12_DA13	NAN	NANT	0	0.47	BB04
25	4i3h_F_DA13_DT14	BBB	BB00	11	0.41	BB00
26	4i3h_F_DT14_DT15	BBw	BB02	11	0.34	BB02
27	4i3h_G_DG8_DG9	A-B	AB03	34	0.57	AB03
28	4i3h_G_DG9_DT10	A-B	AB03	65	0.38	AB03
29	4i3h_G_DT10_DA11	B-A	BA01	25	0.29	BA01
30	4i3h_G_DA11_DA12	A-B	AB05	16	0.49	AB05
31	4i3h_G_DA12_DT13	B12	BB04	44	0.42	BB04
32	4i3h_G_DT13_DA14	B-A	BA10	83	0.28	BA10
33	4i3h_G_DA14_DC15	AAA	AA00	26	0.27	AA00
34	4i3h_G_DC15_DG16	AAw	AA01	85	0.24	AA01
35	4i3h_G_DG16_DG17	AAA	AA03	14	0.46	AA03
36	4i3h_G_DG17_DT18	A-B	AB01	11	0.46	AB01
37	4i3h_G_DT18_DT19	NAN	NANT	0	0.56	BA08
38	4i3h_G_DT19_DA20	A-B	AB03	53	0.47	AB03
39	4i3h_G_DA20_DT21	NAN	NANT	0	0.45	BA05
40	4i3h_G_DT21_DC22	A-B	AB01	11	0.42	AB01
41	4i3h_G_DC22_DC23	B-A	BA05	10	0.40	BA05
42	4i3h_G_DC23_DA24	NAN	NANT	0	0.41	AB01
43	4i3h_G_DA24_DC25	BBB	BB00	28	0.35	BB00
44	4i3h_G_DC25_DA26	NAN	NANT	0	0.34	BA08
45	4i3h_G_DA26_DG27	NAN	NANT	0	0.66	AA08
46	4i3h_H_DC8_DT9	A-B	AB03	17	0.47	AB03
47	4i3h_H_DT9_DG10	BBB	BB01	48	0.29	BB01
48	4i3h_H_DG10_DT11	BBB	BB01	18	0.34	BB01
49	4i3h_H_DT11_DG12	NAN	NANT	0	0.60	AB03
50	4i3h_H_DG12_DG13	NAN	NANT	0	0.43	BA08
51	4i3h_H_DG13_DA14	B-A	BA10	23	0.41	BA10
52	4i3h_H_DA14_DT15	AAA	AA00	89	0.19	AA00
53	4i3h_H_DT15_DA16	AAA	AA08	66	0.18	AA08
54	4i3h_H_DA16_DA17	AAw	AA01	12	0.40	AA01
55	4i3h_H_DA17_DC18	NAN	NANT	0	0.41	AA04
56	4i3h_H_DC18_DC19	A-B	AB05	36	0.35	AB05
57	4i3h_H_DC19_DG20	B-A	BA08	27	0.38	BA08
58	4i3h_H_DG20_DT21	AAA	AA08	85	0.16	AA08
59	4i3h_H_DT21_DA22	A-B	AB05	29	0.32	AB05
60	4i3h_H_DA22_DT23	NAN	NANT	0	0.50	BB16
61	4i3h_H_DT23_DT24	NAN	NANT	0	0.48	AB01
62	4i3h_H_DT24_DA25	BBB	BB00	36	0.34	BB00
63	4i3h_H_DA25_DC26	BBB	BB00	45	0.44	BB00
64	4i3h_H_DC26_DC27	NAN	NANT	0	0.89	BB12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

IC

OPN

Z

N

Results of the assignment of 64 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible