Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The Structure of FixK2 from Bradyrhizobium japonicum
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 47 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4i2o_W_DG3_DG4 | BBB | BB00 | 89 | 0.23 |
| 02 | 4i2o_W_DG4_DG5 | B12 | BB04 | 17 | 0.49 |
| 03 | 4i2o_W_DG5_DA6 | BBB | BB00 | 63 | 0.18 |
| 04 | 4i2o_W_DA6_DA7 | BBB | BB01 | 94 | 0.14 |
| 05 | 4i2o_W_DA7_DT8 | BBB | BB01 | 84 | 0.22 |
| 06 | 4i2o_W_DT8_DT9 | B-A | BA05 | 82 | 0.16 |
| 07 | 4i2o_W_DT9_DG10 | BBB | BB01 | 60 | 0.25 |
| 08 | 4i2o_W_DG10_DA11 | BBB | BB00 | 87 | 0.19 |
| 09 | 4i2o_W_DA11_DT12 | B-A | BA05 | 94 | 0.21 |
| 10 | 4i2o_W_DT12_DT13 | BBB | BB01 | 34 | 0.33 |
| 11 | 4i2o_W_DT13_DG14 | BBB | BB00 | 76 | 0.18 |
| 12 | 4i2o_W_DG14_DA15 | B12 | BB04 | 81 | 0.28 |
| 13 | 4i2o_W_DA15_DA16 | BBB | BB01 | 53 | 0.32 |
| 14 | 4i2o_W_DA16_DA17 | BBB | BB00 | 65 | 0.33 |
| 15 | 4i2o_W_DA17_DT18 | B-A | BA05 | 77 | 0.29 |
| 16 | 4i2o_W_DT18_DC19 | BBB | BB00 | 65 | 0.20 |
| 17 | 4i2o_W_DC19_DA20 | BBB | BB00 | 81 | 0.23 |
| 18 | 4i2o_W_DA20_DA21 | NAN | NANT | 0 | 0.58 |
| 19 | 4i2o_W_DA21_DG22 | BBw | BB03 | 58 | 0.33 |
| 20 | 4i2o_W_DG22_DA23 | BBB | BB00 | 65 | 0.28 |
| 21 | 4i2o_W_DA23_DT24 | BBB | BB00 | 67 | 0.26 |
| 22 | 4i2o_W_DT24_DA25 | BBB | BB00 | 57 | 0.29 |
| 23 | 4i2o_W_DA25_DG26 | NAN | NANT | 0 | 0.37 |
| 24 | 4i2o_W_DG26_DG27 | NAN | NANT | 0 | 0.47 |
| 25 | 4i2o_X_DC3_DT4 | BBB | BB00 | 77 | 0.33 |
| 26 | 4i2o_X_DT4_DA5 | NAN | NANT | 0 | 0.79 |
| 27 | 4i2o_X_DA5_DT6 | SYN | BBS1 | 44 | 0.41 |
| 28 | 4i2o_X_DT6_DC7 | BBB | BB01 | 79 | 0.20 |
| 29 | 4i2o_X_DC7_DT8 | BBB | BB01 | 83 | 0.21 |
| 30 | 4i2o_X_DT8_DT9 | B-A | BA05 | 80 | 0.17 |
| 31 | 4i2o_X_DT9_DG10 | BBB | BB01 | 34 | 0.25 |
| 32 | 4i2o_X_DG10_DA11 | BBB | BB00 | 90 | 0.20 |
| 33 | 4i2o_X_DA11_DT12 | B-A | BA05 | 92 | 0.22 |
| 34 | 4i2o_X_DT12_DT13 | BBB | BB01 | 30 | 0.34 |
| 35 | 4i2o_X_DT13_DT14 | BBB | BB00 | 83 | 0.22 |
| 36 | 4i2o_X_DT14_DC15 | B12 | BB04 | 57 | 0.31 |
| 37 | 4i2o_X_DC15_DA16 | BBB | BB00 | 71 | 0.30 |
| 38 | 4i2o_X_DA16_DA17 | BBB | BB00 | 77 | 0.33 |
| 39 | 4i2o_X_DA17_DT18 | B-A | BA05 | 79 | 0.29 |
| 40 | 4i2o_X_DT18_DC19 | BBB | BB00 | 69 | 0.19 |
| 41 | 4i2o_X_DC19_DA20 | BBB | BB00 | 88 | 0.26 |
| 42 | 4i2o_X_DA20_DA21 | NAN | NANT | 0 | 0.63 |
| 43 | 4i2o_X_DA21_DT22 | NAN | NANT | 0 | 0.70 |
| 44 | 4i2o_X_DT22_DT23 | BBB | BB00 | 38 | 0.40 |
| 45 | 4i2o_X_DT23_DC24 | BBB | BB00 | 91 | 0.19 |
| 46 | 4i2o_X_DC24_DC25 | NAN | NANT | 0 | 0.55 |
| 47 | 4i2o_X_DC25_DC26 | NAN | NANT | 0 | 0.61 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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