Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
GR DNA Binding Domain - TSLP nGRE Complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4hn5_C_DC857_DG858 | BBw | BB16 | 38 | 0.43 |
| 02 | 4hn5_C_DG858_DC859 | B-A | BA01 | 68 | 0.20 |
| 03 | 4hn5_C_DC859_DC860 | AAA | AA00 | 44 | 0.43 |
| 04 | 4hn5_C_DC860_DT861 | A-B | AB01 | 96 | 0.19 |
| 05 | 4hn5_C_DT861_DC862 | BBB | BB01 | 84 | 0.18 |
| 06 | 4hn5_C_DC862_DC863 | BBB | BB00 | 29 | 0.20 |
| 07 | 4hn5_C_DC863_DG864 | B12 | BB04 | 77 | 0.25 |
| 08 | 4hn5_C_DG864_DG865 | BBB | BB00 | 82 | 0.30 |
| 09 | 4hn5_C_DG865_DG866 | BB2 | BB07 | 51 | 0.36 |
| 10 | 4hn5_C_DG866_DA867 | BBw | BB02 | 30 | 0.32 |
| 11 | 4hn5_C_DA867_DG868 | BBB | BB00 | 30 | 0.31 |
| 12 | 4hn5_C_DG868_DA869 | NAN | NANT | 0 | 0.31 |
| 13 | 4hn5_C_DA869_DG870 | BBB | BB00 | 54 | 0.26 |
| 14 | 4hn5_C_DG870_DC871 | NAN | NANT | 0 | 0.62 |
| 15 | 4hn5_C_DC871_DT872 | BBw | BB16 | 82 | 0.42 |
| 16 | 4hn5_D_DA842_DG843 | NAN | NANT | 0 | 0.46 |
| 17 | 4hn5_D_DG843_DC844 | B-A | BA05 | 92 | 0.19 |
| 18 | 4hn5_D_DC844_DT845 | BBB | BB01 | 57 | 0.21 |
| 19 | 4hn5_D_DT845_DC846 | BBB | BB00 | 34 | 0.24 |
| 20 | 4hn5_D_DC846_DT847 | B12 | BB04 | 88 | 0.22 |
| 21 | 4hn5_D_DT847_DC848 | BBB | BB00 | 66 | 0.33 |
| 22 | 4hn5_D_DC848_DC849 | NAN | NANT | 0 | 0.30 |
| 23 | 4hn5_D_DC849_DC850 | BBB | BB00 | 69 | 0.26 |
| 24 | 4hn5_D_DC850_DG851 | B-A | BA08 | 80 | 0.18 |
| 25 | 4hn5_D_DG851_DG852 | A-B | AB01 | 70 | 0.22 |
| 26 | 4hn5_D_DG852_DA853 | BBB | BB00 | 70 | 0.21 |
| 27 | 4hn5_D_DA853_DG854 | B-A | BA05 | 62 | 0.25 |
| 28 | 4hn5_D_DG854_DG855 | B-A | BA05 | 53 | 0.31 |
| 29 | 4hn5_D_DG855_DC856 | AAA | AA00 | 26 | 0.43 |
| 30 | 4hn5_D_DC856_DG857 | A-B | AB01 | 33 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|