Conformers:
ABBIImiBZICOPNSYNN
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Mus Musculus Tdp2-DNA Substrate Analog (5'-6-aminohexanol) Complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4gz0_C_DC2_DC3 | NAN | NANT | 0 | 0.85 |
| 02 | 4gz0_C_DC3_DG4 | BBB | BB00 | 50 | 0.45 |
| 03 | 4gz0_C_DG4_DA5 | BBB | BB01 | 44 | 0.31 |
| 04 | 4gz0_C_DA5_DA6 | BBB | BB00 | 41 | 0.26 |
| 05 | 4gz0_C_DA6_DT7 | BBB | BB00 | 11 | 0.26 |
| 06 | 4gz0_C_DT7_DT8 | BBB | BB00 | 85 | 0.15 |
| 07 | 4gz0_C_DT8_DC9 | miB | BB15 | 30 | 0.29 |
| 08 | 4gz0_C_DC9_DG10 | B12 | BB04 | 50 | 0.34 |
| 09 | 4gz0_D_DC2_DC3 | NAN | NANT | 0 | 0.85 |
| 10 | 4gz0_D_DC3_DG4 | BBB | BB00 | 63 | 0.46 |
| 11 | 4gz0_D_DG4_DA5 | B-A | BA01 | 25 | 0.22 |
| 12 | 4gz0_D_DA5_DA6 | A-B | AB01 | 50 | 0.30 |
| 13 | 4gz0_D_DA6_DT7 | miB | BB15 | 81 | 0.22 |
| 14 | 4gz0_D_DT7_DT8 | BBB | BB00 | 53 | 0.20 |
| 15 | 4gz0_D_DT8_DC9 | BBB | BB00 | 51 | 0.22 |
| 16 | 4gz0_D_DC9_DG10 | BB2 | BB07 | 80 | 0.26 |
| 17 | 4gz0_F_DC2_DC3 | NAN | NANT | 0 | 0.79 |
| 18 | 4gz0_F_DC3_DG4 | BBB | BB00 | 55 | 0.46 |
| 19 | 4gz0_F_DG4_DA5 | B-A | BA01 | 76 | 0.15 |
| 20 | 4gz0_F_DA5_DA6 | BBB | BB01 | 28 | 0.33 |
| 21 | 4gz0_F_DA6_DT7 | BBB | BB00 | 66 | 0.19 |
| 22 | 4gz0_F_DT7_DT8 | BBB | BB00 | 91 | 0.17 |
| 23 | 4gz0_F_DT8_DC9 | BBB | BB00 | 76 | 0.26 |
| 24 | 4gz0_F_DC9_DG10 | B12 | BB04 | 70 | 0.31 |
| 25 | 4gz0_L_DC2_DC3 | NAN | NANT | 0 | 0.78 |
| 26 | 4gz0_L_DC3_DG4 | BBB | BB00 | 62 | 0.48 |
| 27 | 4gz0_L_DG4_DA5 | BB2 | BB07 | 75 | 0.17 |
| 28 | 4gz0_L_DA5_DA6 | BBB | BB00 | 69 | 0.10 |
| 29 | 4gz0_L_DA6_DT7 | BBB | BB00 | 73 | 0.24 |
| 30 | 4gz0_L_DT7_DT8 | B-A | BA01 | 17 | 0.18 |
| 31 | 4gz0_L_DT8_DC9 | NAN | NANT | 0 | 0.44 |
| 32 | 4gz0_L_DC9_DG10 | NAN | NANT | 0 | 0.45 |
| 33 | 4gz0_H_DC2_DC3 | NAN | NANT | 0 | 0.79 |
| 34 | 4gz0_H_DC3_DG4 | BBB | BB00 | 62 | 0.49 |
| 35 | 4gz0_H_DG4_DA5 | BB2 | BB07 | 74 | 0.27 |
| 36 | 4gz0_H_DA5_DA6 | BBB | BB00 | 91 | 0.10 |
| 37 | 4gz0_H_DA6_DT7 | BBB | BB01 | 57 | 0.26 |
| 38 | 4gz0_H_DT7_DT8 | BBB | BB01 | 73 | 0.21 |
| 39 | 4gz0_H_DT8_DC9 | BBB | BB00 | 28 | 0.30 |
| 40 | 4gz0_H_DC9_DG10 | B12 | BB04 | 63 | 0.38 |
| 41 | 4gz0_J_DC2_DC3 | NAN | NANT | 0 | 0.82 |
| 42 | 4gz0_J_DC3_DG4 | BBB | BB00 | 64 | 0.48 |
| 43 | 4gz0_J_DG4_DA5 | B12 | BB04 | 37 | 0.21 |
| 44 | 4gz0_J_DA5_DA6 | BBB | BB00 | 66 | 0.19 |
| 45 | 4gz0_J_DA6_DT7 | BBw | BB02 | 90 | 0.16 |
| 46 | 4gz0_J_DT7_DT8 | BBB | BB00 | 53 | 0.25 |
| 47 | 4gz0_J_DT8_DC9 | NAN | NANT | 0 | 0.40 |
| 48 | 4gz0_J_DC9_DG10 | NAN | NANT | 0 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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