Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
structure of No factor protein-DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4gct_W_DT1_DT2 | BBB | BB00 | 77 | 0.21 |
| 02 | 4gct_W_DT2_DA3 | BBB | BB00 | 75 | 0.27 |
| 03 | 4gct_W_DA3_DC4 | BBB | BB00 | 74 | 0.26 |
| 04 | 4gct_W_DC4_DG5 | BBB | BB00 | 55 | 0.46 |
| 05 | 4gct_W_DG5_DT6 | BBB | BB00 | 55 | 0.35 |
| 06 | 4gct_W_DT6_DG7 | BB2 | BB07 | 57 | 0.40 |
| 07 | 4gct_W_DG7_DA8 | BBB | BB00 | 83 | 0.15 |
| 08 | 4gct_W_DA8_DG9 | BBB | BB00 | 24 | 0.47 |
| 09 | 4gct_W_DG9_DT10 | NAN | NANT | 0 | 0.66 |
| 10 | 4gct_W_DT10_DA11 | B12 | BB04 | 59 | 0.24 |
| 11 | 4gct_W_DA11_DC12 | BBB | BB00 | 82 | 0.23 |
| 12 | 4gct_W_DC12_DT13 | BBB | BB00 | 64 | 0.41 |
| 13 | 4gct_W_DT13_DC14 | BBB | BB00 | 86 | 0.23 |
| 14 | 4gct_W_DC14_DA15 | B12 | BB04 | 68 | 0.38 |
| 15 | 4gct_W_DA15_DC16 | BBB | BB00 | 80 | 0.24 |
| 16 | 4gct_W_DC16_DG17 | NAN | NANT | 0 | 0.48 |
| 17 | 4gct_W_DG17_DT18 | BBw | BB16 | 78 | 0.27 |
| 18 | 4gct_W_DT18_DA19 | BB2 | BB07 | 46 | 0.35 |
| 19 | 4gct_W_DA19_DA20 | BBB | BB00 | 70 | 0.32 |
| 20 | 4gct_Z_DT19_DT20 | B12 | BB04 | 62 | 0.35 |
| 21 | 4gct_Z_DT20_DA21 | BBw | BB02 | 34 | 0.42 |
| 22 | 4gct_Z_DA21_DC22 | BBB | BB00 | 48 | 0.31 |
| 23 | 4gct_Z_DC22_DG23 | miB | BB12 | 27 | 0.52 |
| 24 | 4gct_Z_DG23_DT24 | BBw | BB16 | 64 | 0.39 |
| 25 | 4gct_Z_DT24_DG25 | BB2 | BB07 | 64 | 0.37 |
| 26 | 4gct_Z_DG25_DA26 | BBB | BB00 | 82 | 0.17 |
| 27 | 4gct_Z_DA26_DG27 | miB | BB12 | 78 | 0.21 |
| 28 | 4gct_Z_DG27_DT28 | NAN | NANT | 0 | 0.97 |
| 29 | 4gct_Z_DT28_DA29 | BBB | BB00 | 65 | 0.46 |
| 30 | 4gct_Z_DA29_DC30 | BBB | BB00 | 79 | 0.20 |
| 31 | 4gct_Z_DC30_DT31 | BBB | BB00 | 39 | 0.49 |
| 32 | 4gct_Z_DT31_DC32 | BBB | BB00 | 90 | 0.14 |
| 33 | 4gct_Z_DC32_DA33 | B12 | BB04 | 63 | 0.38 |
| 34 | 4gct_Z_DA33_DC34 | BBB | BB00 | 79 | 0.21 |
| 35 | 4gct_Z_DC34_DG35 | B12 | BB04 | 54 | 0.37 |
| 36 | 4gct_Z_DG35_DT36 | BBB | BB00 | 73 | 0.24 |
| 37 | 4gct_Z_DT36_DA37 | BBB | BB00 | 75 | 0.31 |
| 38 | 4gct_Z_DA37_DA38 | BBB | BB00 | 48 | 0.33 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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