Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CCAAT-binding complex from Aspergillus nidulans with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4g92_D_DT1_DT2 | BBB | BB00 | 52 | 0.22 |
| 02 | 4g92_D_DT2_DC3 | BBB | BB00 | 92 | 0.14 |
| 03 | 4g92_D_DC3_DA4 | BBB | BB00 | 93 | 0.13 |
| 04 | 4g92_D_DA4_DT5 | BBB | BB00 | 88 | 0.21 |
| 05 | 4g92_D_DT5_DC6 | B-A | BA08 | 85 | 0.34 |
| 06 | 4g92_D_DC6_DC7 | AAA | AA00 | 25 | 0.26 |
| 07 | 4g92_D_DC7_DT8 | A-B | AB01 | 28 | 0.30 |
| 08 | 4g92_D_DT8_DA9 | BBB | BB00 | 90 | 0.17 |
| 09 | 4g92_D_DA9_DC10 | BBB | BB00 | 11 | 0.28 |
| 10 | 4g92_D_DC10_DC11 | BBB | BB01 | 63 | 0.24 |
| 11 | 4g92_D_DC11_DT12 | NAN | NANT | 0 | 0.47 |
| 12 | 4g92_D_DT12_DC13 | BBB | BB00 | 26 | 0.46 |
| 13 | 4g92_D_DC13_DT14 | miB | BB10 | 37 | 0.51 |
| 14 | 4g92_D_DT14_DG15 | BB2 | BB07 | 45 | 0.46 |
| 15 | 4g92_D_DG15_DA16 | BB2 | BB07 | 64 | 0.28 |
| 16 | 4g92_D_DA16_DT17 | BBB | BB00 | 68 | 0.21 |
| 17 | 4g92_D_DT17_DT18 | B-A | BA05 | 51 | 0.27 |
| 18 | 4g92_D_DT18_DG19 | A-B | AB01 | 17 | 0.36 |
| 19 | 4g92_D_DG19_DG20 | B12 | BB04 | 21 | 0.41 |
| 20 | 4g92_D_DG20_DT21 | B-A | BA05 | 78 | 0.30 |
| 21 | 4g92_D_DT21_DC22 | BBB | BB00 | 41 | 0.19 |
| 22 | 4g92_D_DC22_DA23 | BBB | BB00 | 65 | 0.22 |
| 23 | 4g92_D_DA23_DA24 | BBB | BB00 | 78 | 0.33 |
| 24 | 4g92_D_DA24_DT25 | BBB | BB01 | 60 | 0.21 |
| 25 | 4g92_E_DA1_DA2 | BBB | BB00 | 66 | 0.22 |
| 26 | 4g92_E_DA2_DA3 | BBB | BB00 | 80 | 0.22 |
| 27 | 4g92_E_DA3_DT4 | BBB | BB00 | 80 | 0.17 |
| 28 | 4g92_E_DT4_DT5 | BBB | BB00 | 83 | 0.24 |
| 29 | 4g92_E_DT5_DG6 | BB2 | BB07 | 79 | 0.27 |
| 30 | 4g92_E_DG6_DA7 | BBB | BB00 | 69 | 0.35 |
| 31 | 4g92_E_DA7_DC8 | B-A | BA05 | 58 | 0.19 |
| 32 | 4g92_E_DC8_DC9 | AAA | AA02 | 79 | 0.28 |
| 33 | 4g92_E_DC9_DA10 | A-B | AB01 | 28 | 0.37 |
| 34 | 4g92_E_DA10_DA11 | BB2 | BB07 | 50 | 0.35 |
| 35 | 4g92_E_DA11_DT12 | B-A | BA17 | 32 | 0.41 |
| 36 | 4g92_E_DT12_DC13 | NAN | NANT | 0 | 0.35 |
| 37 | 4g92_E_DC13_DA14 | BB2 | BB07 | 78 | 0.34 |
| 38 | 4g92_E_DA14_DG15 | BBB | BB00 | 59 | 0.26 |
| 39 | 4g92_E_DG15_DA16 | BB2 | BB07 | 72 | 0.27 |
| 40 | 4g92_E_DA16_DG17 | BBB | BB00 | 92 | 0.09 |
| 41 | 4g92_E_DG17_DG18 | BBB | BB00 | 86 | 0.15 |
| 42 | 4g92_E_DG18_DT19 | BBB | BB00 | 90 | 0.17 |
| 43 | 4g92_E_DT19_DA20 | BB2 | BB07 | 51 | 0.29 |
| 44 | 4g92_E_DA20_DG21 | BBB | BB00 | 82 | 0.21 |
| 45 | 4g92_E_DG21_DG22 | BBB | BB00 | 66 | 0.19 |
| 46 | 4g92_E_DG22_DA23 | BBB | BB01 | 86 | 0.10 |
| 47 | 4g92_E_DA23_DT24 | miB | BB10 | 37 | 0.33 |
| 48 | 4g92_E_DT24_DG25 | BBB | BB00 | 75 | 0.20 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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