Conformers:
ABBIImiBZICOPNSYNN
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MutM containing F114A mutation bound to undamaged DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4g4q_B_DA1_DG2 | BBw | BB16 | 81 | 0.33 |
| 02 | 4g4q_B_DG2_DG3 | BB2 | BB07 | 59 | 0.26 |
| 03 | 4g4q_B_DG3_DT4 | B-A | BA01 | 60 | 0.16 |
| 04 | 4g4q_B_DT4_DA5 | A-B | AB01 | 59 | 0.19 |
| 05 | 4g4q_B_DA5_DG6 | B-A | BA01 | 54 | 0.28 |
| 06 | 4g4q_B_DG6_DA7 | A-B | AB01 | 77 | 0.28 |
| 07 | 4g4q_B_DA7_DC8 | NAN | NANT | 0 | 0.39 |
| 08 | 4g4q_B_DC8_DT9 | BBB | BB00 | 60 | 0.32 |
| 09 | 4g4q_B_DT9_DC10 | NAN | NANT | 0 | 0.85 |
| 10 | 4g4q_B_DC10_DG11 | A-B | AB01 | 37 | 0.28 |
| 11 | 4g4q_B_DG11_DG12 | B12 | BB04 | 62 | 0.27 |
| 12 | 4g4q_B_DG12_DA13 | B-A | BA01 | 76 | 0.21 |
| 13 | 4g4q_B_DA13_DC14 | NAN | NANT | 0 | 0.41 |
| 14 | 4g4q_C_DG4_DT5 | BBB | BB00 | 33 | 0.28 |
| 15 | 4g4q_C_DT5_DC6 | BBB | BB01 | 46 | 0.13 |
| 16 | 4g4q_C_DC6_DC7 | AAA | AA02 | 47 | 0.50 |
| 17 | 4g4q_C_DC7_DG8 | A-B | AB03 | 28 | 0.52 |
| 18 | 4g4q_C_DG8_DA9 | NAN | NANT | 0 | 0.67 |
| 19 | 4g4q_C_DA9_DG10 | BBB | BB00 | 40 | 0.39 |
| 20 | 4g4q_C_DC12_DT13 | BBB | BB00 | 78 | 0.22 |
| 21 | 4g4q_C_DT13_DA14 | NAN | NANT | 0 | 0.60 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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