Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
N4 mini-vRNAP transcription initiation complex, 2 min after soaking GTP, ATP and Mn

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014ff2_C_DT3_DT4NANNANT00.87 OP17
024ff2_C_DT4_DC5AAAAA00740.20 AA00
034ff2_C_DC5_DA6AAAAA00660.16 AA00
044ff2_C_DA6_DA7NANNANT00.67 OP05
054ff2_C_DA7_DA8B12BB04830.25 BB04
064ff2_C_DA8_DA9NANNANT00.70 BA05
074ff2_C_DA9_DG10NANNANT00.94 OP30
084ff2_C_DG10_DA11BBBBB00410.26 BB00
094ff2_C_DA11_DA12BBBBB00680.31 BB00
104ff2_C_DA12_DG13B12BB04330.43 BB04
114ff2_C_DG13_DC14BBBBB00730.29 BB00
124ff2_C_DC14_DG15NANNANT00.83 BA08
134ff2_C_DG15_DG16NANNANT00.52 BB00
144ff2_C_DG16_DA17NANNANT00.78 OP19
154ff2_C_DA17_DG18BBBBB00320.45 BB00
164ff2_C_DG18_DC19BB2BB07320.36 BB07
174ff2_C_DC19_DT20B-ABA05770.28 BA05
184ff2_C_DT20_DT21A-BAB03890.27 AB03
194ff2_C_DT21_DC22B-ABA01120.16 BA01
204ff2_D_DT3_DT4NANNANT00.45 OP29
214ff2_D_DT4_DC5AAAAA00600.33 AA00
224ff2_D_DC5_DA6AAAAA00490.19 AA00
234ff2_D_DA6_DA7NANNANT00.70 OP05
244ff2_D_DA7_DA8B12BB04900.27 BB04
254ff2_D_DA8_DA9NANNANT00.62 BB00
264ff2_D_DA9_DG10NANNANT00.99 OP30
274ff2_D_DG10_DA11BBBBB00400.26 BB00
284ff2_D_DA11_DA12BBBBB00810.25 BB00
294ff2_D_DA12_DG13B12BB04580.38 BB04
304ff2_D_DG13_DC14BBBBB00760.26 BB00
314ff2_D_DC14_DG15NANNANT00.88 BA08
324ff2_D_DG15_DG16NANNANT00.51 BB00
334ff2_D_DG16_DA17NANNANT00.78 OP19
344ff2_D_DA17_DG18BBBBB00420.39 BB00
354ff2_D_DG18_DC19BB2BB07410.35 BB07
364ff2_D_DC19_DT20B-ABA05640.21 BA05
374ff2_D_DT20_DT21A-BAB01400.20 AB01
384ff2_D_DT21_DC22BBBBB01180.29 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N