Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human DNA polymerase eta - DNA ternary complex: Reaction in the TG crystal at pH 7.0, Normal translocation
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4ed8_T_DA2_DT3 | A-B | AB05 | 21 | 0.39 |
| 02 | 4ed8_T_DT3_DT4 | BBB | BB00 | 91 | 0.14 |
| 03 | 4ed8_T_DT4_DA5 | B-A | BA09 | 83 | 0.28 |
| 04 | 4ed8_T_DA5_DT6 | NAN | NANT | 0 | 0.45 |
| 05 | 4ed8_T_DT6_DG7 | BBB | BB00 | 39 | 0.35 |
| 06 | 4ed8_T_DG7_DA8 | BBB | BB00 | 81 | 0.30 |
| 07 | 4ed8_T_DA8_DC9 | BBB | BB01 | 92 | 0.14 |
| 08 | 4ed8_T_DC9_DG10 | BBB | BB00 | 64 | 0.29 |
| 09 | 4ed8_T_DG10_DC11 | BBB | BB00 | 86 | 0.22 |
| 10 | 4ed8_T_DC11_DG12 | NAN | NANT | 0 | 2.46 |
| 11 | 4ed8_P_DT1_DG2 | OPN | OP22 | 17 | 0.92 |
| 12 | 4ed8_P_DG2_DC3 | B-A | BA05 | 80 | 0.21 |
| 13 | 4ed8_P_DC3_DG4 | BBB | BB00 | 20 | 0.27 |
| 14 | 4ed8_P_DG4_DT5 | BBB | BB01 | 87 | 0.12 |
| 15 | 4ed8_P_DT5_DC6 | BBB | BB01 | 82 | 0.17 |
| 16 | 4ed8_P_DC6_DA7 | BBB | BB01 | 70 | 0.21 |
| 17 | 4ed8_P_DA7_DT.A8 | B-A | BA05 | 80 | 0.27 |
| 18 | 4ed8_P_DA7_DT.B8 | B-A | BA05 | 20 | 0.30 |
| 19 | 4ed8_P_DT.A8_DA.A9 | A-B | AB01 | 11 | 0.33 |
| 20 | 4ed8_P_DT.B8_DA.B9 | A-B | AB02 | 38 | 0.33 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| Color by NtC (balls) |
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| B | ||||
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