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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.0 (Na+ MES) with 1 Ca2+ ion

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014ed1_T_DA2_DT3NANNANT01.27 OP18
024ed1_T_DT3_DT4BBBBB00670.24 BB00
034ed1_T_DT4_DA5BBBBB00890.14 BB00
044ed1_T_DA5_DT6B-ABA09780.30 BA09
054ed1_T_DT6_DG7NANNANT00.47 AB04
064ed1_T_DG7_DA8A-BAB03630.46 AB03
074ed1_T_DA8_DC9BBBBB00870.16 BB00
084ed1_T_DC9_DG10B12BB04650.24 BB04
094ed1_T_DG10_DC11BBBBB00800.22 BB00
104ed1_T_DC11_DT12BBBBB00880.22 BB00
114ed1_P_DA.A1_DG.A2BBBBB00300.40 BB00
124ed1_P_DA.B1_DG.B2NANNANT00.35 BB00
134ed1_P_DG.A2_DC3B-ABA05790.33 BA05
144ed1_P_DG.B2_DC3BBBBB01820.15 BB01
154ed1_P_DC3_DG4BBBBB01740.19 BB01
164ed1_P_DG4_DT5BBBBB00690.22 BB00
174ed1_P_DT5_DC6B-ABA05860.10 BA05
184ed1_P_DC6_DA.A7B-ABA05520.29 BA05
194ed1_P_DC6_DA.B7B-ABA05130.34 BA05
204ed1_P_DA.A7_DT.A8A-BAB01710.28 AB01
214ed1_P_DA.B7_DT.B8A-BAB02430.31 AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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