Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 6.8 (Na+ MES) with 1 Ca2+ ion
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4ed0_T_DA2_DT3 | NAN | NANT | 0 | 1.20 |
| 02 | 4ed0_T_DT3_DT4 | BBB | BB00 | 65 | 0.29 |
| 03 | 4ed0_T_DT4_DA5 | BBB | BB00 | 89 | 0.15 |
| 04 | 4ed0_T_DA5_DT6 | B-A | BA09 | 85 | 0.28 |
| 05 | 4ed0_T_DT6_DG7 | A-B | AB04 | 24 | 0.50 |
| 06 | 4ed0_T_DG7_DA8 | BBB | BB00 | 21 | 0.45 |
| 07 | 4ed0_T_DA8_DC9 | BBB | BB00 | 88 | 0.14 |
| 08 | 4ed0_T_DC9_DG10 | BBB | BB00 | 60 | 0.34 |
| 09 | 4ed0_T_DG10_DC11 | BBB | BB00 | 83 | 0.20 |
| 10 | 4ed0_T_DC11_DT12 | BBB | BB00 | 84 | 0.23 |
| 11 | 4ed0_P_DA.A1_DG.A2 | BBB | BB00 | 19 | 0.46 |
| 12 | 4ed0_P_DA.B1_DG.B2 | BBB | BB00 | 44 | 0.31 |
| 13 | 4ed0_P_DG.A2_DC3 | BBB | BB01 | 87 | 0.21 |
| 14 | 4ed0_P_DG.B2_DC3 | BBB | BB01 | 91 | 0.13 |
| 15 | 4ed0_P_DC3_DG4 | BBB | BB01 | 83 | 0.16 |
| 16 | 4ed0_P_DG4_DT5 | BBB | BB00 | 61 | 0.22 |
| 17 | 4ed0_P_DT5_DC6 | B-A | BA05 | 89 | 0.09 |
| 18 | 4ed0_P_DC6_DA.A7 | B-A | BA05 | 45 | 0.30 |
| 19 | 4ed0_P_DC6_DA.B7 | AAA | AA02 | 12 | 0.61 |
| 20 | 4ed0_P_DA.A7_DT.A8 | A-B | AB01 | 59 | 0.32 |
| 21 | 4ed0_P_DA.B7_DT.B8 | A-B | AB02 | 30 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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