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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of 19mer double-helical RNA containing CUG/CGG-repeats

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014e5c_A_G1_G2AAAAA00720.26 AA00
024e5c_A_G2_C3AAAAA00830.20 AA00
034e5c_A_C3_G4AAwAA01850.20 AA01
044e5c_A_G4_G5AAAAA00490.30 AA00
054e5c_A_G5_C6AAAAA00800.23 AA00
064e5c_A_C6_G7AAAAA04650.38 AA04
074e5c_A_G7_G8AAAAA00350.20 AA00
084e5c_A_G8_C9AAAAA00920.15 AA00
094e5c_A_C9_G10AAAAA00700.17 AA00
104e5c_A_G10_G11AAAAA00770.21 AA00
114e5c_A_G11_C12AAAAA00930.08 AA00
124e5c_A_C12_U13AAAAA00850.27 AA00
134e5c_A_U13_G14AAuAA12850.17 AA12
144e5c_A_G14_C15AAAAA00970.12 AA00
154e5c_A_C15_U16AAAAA00880.20 AA00
164e5c_A_U16_G17AAAAA00670.19 AA00
174e5c_A_G17_C18AAAAA00870.12 AA00
184e5c_A_C18_C19AAAAA00250.19 AA00
194e5c_B_G1_G2AAAAA00890.13 AA00
204e5c_B_G2_C3AAAAA00950.09 AA00
214e5c_B_C3_G4AAAAA00630.22 AA00
224e5c_B_G4_G5AAAAA00790.18 AA00
234e5c_B_G5_C6AAAAA00900.13 AA00
244e5c_B_C6_G7AAwAA01920.16 AA01
254e5c_B_G7_G8AAAAA00730.22 AA00
264e5c_B_G8_C9AAAAA00900.13 AA00
274e5c_B_C9_G10NANNANT01.07 IC04
284e5c_B_G10_G11SYNAAS1400.46 AAS1
294e5c_B_G11_C12AAAAA00870.17 AA00
304e5c_B_C12_U13AAAAA00870.20 AA00
314e5c_B_U13_G14AAAAA04810.26 AA04
324e5c_B_G14_C15AAAAA00760.20 AA00
334e5c_B_C15_U16AAAAA00850.25 AA00
344e5c_B_U16_G17AAuAA12870.16 AA12
354e5c_B_G17_C18AAAAA00920.15 AA00
364e5c_B_C18_C19AAAAA00890.18 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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