Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Human PARP-1 bound to a DNA double strand break
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4dqy_M_DG1_DC2 | A-B | AB05 | 40 | 0.22 |
| 02 | 4dqy_M_DC2_DC3 | BBB | BB00 | 91 | 0.16 |
| 03 | 4dqy_M_DC3_DT4 | BBB | BB00 | 70 | 0.20 |
| 04 | 4dqy_M_DT4_DA5 | BB2 | BB07 | 91 | 0.17 |
| 05 | 4dqy_M_DA5_DC6 | BBB | BB00 | 87 | 0.14 |
| 06 | 4dqy_M_DC6_DC7 | miB | BB10 | 29 | 0.32 |
| 07 | 4dqy_M_DC7_DG8 | BBB | BB01 | 11 | 0.41 |
| 08 | 4dqy_M_DG8_DG9 | NAN | NANT | 0 | 0.36 |
| 09 | 4dqy_M_DG9_DT10 | B-A | BA01 | 28 | 0.24 |
| 10 | 4dqy_M_DT10_DT11 | A-B | AB03 | 73 | 0.25 |
| 11 | 4dqy_M_DT11_DC12 | miB | BB15 | 57 | 0.30 |
| 12 | 4dqy_M_DC12_DG13 | BBB | BB00 | 56 | 0.26 |
| 13 | 4dqy_M_DG13_DC14 | B12 | BB04 | 18 | 0.30 |
| 14 | 4dqy_M_DC14_DG15 | miB | BB10 | 38 | 0.47 |
| 15 | 4dqy_M_DG15_DA16 | B12 | BB04 | 76 | 0.15 |
| 16 | 4dqy_M_DA16_DA17 | miB | BB10 | 40 | 0.34 |
| 17 | 4dqy_M_DA17_DC18 | BB2 | BB07 | 13 | 0.42 |
| 18 | 4dqy_M_DC18_DC19 | BBB | BB00 | 72 | 0.19 |
| 19 | 4dqy_M_DC19_DG20 | B12 | BB04 | 73 | 0.24 |
| 20 | 4dqy_M_DG20_DG21 | miB | BB10 | 87 | 0.29 |
| 21 | 4dqy_M_DG21_DT22 | BBB | BB00 | 54 | 0.26 |
| 22 | 4dqy_M_DT22_DA23 | BB2 | BB07 | 36 | 0.38 |
| 23 | 4dqy_M_DA23_DG24 | NAN | NANT | 0 | 0.41 |
| 24 | 4dqy_M_DG24_DG25 | BBB | BB01 | 53 | 0.23 |
| 25 | 4dqy_M_DG25_DC26 | B-A | BA05 | 40 | 0.30 |
| 26 | 4dqy_N_DG1_DC2 | AAw | AA01 | 22 | 0.39 |
| 27 | 4dqy_N_DC2_DC3 | A-B | AB04 | 31 | 0.43 |
| 28 | 4dqy_N_DC3_DT4 | BBB | BB00 | 59 | 0.28 |
| 29 | 4dqy_N_DT4_DA5 | BB2 | BB07 | 18 | 0.14 |
| 30 | 4dqy_N_DA5_DC6 | BBB | BB00 | 78 | 0.27 |
| 31 | 4dqy_N_DC6_DC7 | BBB | BB00 | 94 | 0.17 |
| 32 | 4dqy_N_DC7_DG8 | BBB | BB00 | 59 | 0.42 |
| 33 | 4dqy_N_DG8_DG9 | BBB | BB00 | 82 | 0.15 |
| 34 | 4dqy_N_DG9_DT10 | BB2 | BB07 | 21 | 0.36 |
| 35 | 4dqy_N_DT10_DT11 | B-A | BA05 | 43 | 0.33 |
| 36 | 4dqy_N_DT11_DC12 | A-B | AB03 | 70 | 0.23 |
| 37 | 4dqy_N_DC12_DG13 | BBB | BB00 | 34 | 0.27 |
| 38 | 4dqy_N_DG13_DC14 | BBB | BB00 | 84 | 0.20 |
| 39 | 4dqy_N_DC14_DG15 | B12 | BB04 | 59 | 0.27 |
| 40 | 4dqy_N_DG15_DA16 | BBB | BB00 | 57 | 0.36 |
| 41 | 4dqy_N_DA16_DA17 | BBB | BB00 | 49 | 0.25 |
| 42 | 4dqy_N_DA17_DC18 | BBB | BB00 | 69 | 0.25 |
| 43 | 4dqy_N_DC18_DC19 | NAN | NANT | 0 | 0.40 |
| 44 | 4dqy_N_DC19_DG20 | B12 | BB04 | 59 | 0.24 |
| 45 | 4dqy_N_DG20_DG21 | BBB | BB00 | 89 | 0.22 |
| 46 | 4dqy_N_DG21_DT22 | BBB | BB00 | 81 | 0.26 |
| 47 | 4dqy_N_DT22_DA23 | BB2 | BB07 | 77 | 0.22 |
| 48 | 4dqy_N_DA23_DG24 | BBB | BB00 | 87 | 0.11 |
| 49 | 4dqy_N_DG24_DG25 | BBw | BB02 | 75 | 0.28 |
| 50 | 4dqy_N_DG25_DC26 | B-A | BA01 | 18 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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