Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and ddCTP (paired with dG of template)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4dqp_B_DC21_DC22 | NAN | NANT | 0 | 0.31 |
| 02 | 4dqp_B_DC22_DT23 | BBB | BB01 | 67 | 0.15 |
| 03 | 4dqp_B_DT23_DG24 | BBB | BB00 | 25 | 0.25 |
| 04 | 4dqp_B_DG24_DA25 | B-A | BA13 | 91 | 0.08 |
| 05 | 4dqp_B_DA25_DC26 | A-B | AB01 | 29 | 0.40 |
| 06 | 4dqp_B_DC26_DT27 | NAN | NANT | 0 | 0.34 |
| 07 | 4dqp_B_DT27_DC28 | AAA | AA00 | 76 | 0.22 |
| 08 | 4dqp_C_DA1_DT2 | BBB | BB00 | 12 | 0.43 |
| 09 | 4dqp_C_DT2_DG3 | NAN | NANT | 0 | 1.37 |
| 10 | 4dqp_C_DG3_DG4 | AAA | AA00 | 35 | 0.30 |
| 11 | 4dqp_C_DG4_DG5 | AAA | AA00 | 78 | 0.24 |
| 12 | 4dqp_C_DG5_DA6 | AAw | AA01 | 94 | 0.14 |
| 13 | 4dqp_C_DA6_DG7 | A-B | AB04 | 88 | 0.13 |
| 14 | 4dqp_C_DG7_DT8 | BBB | BB00 | 86 | 0.19 |
| 15 | 4dqp_C_DT8_DC9 | B-A | BA05 | 85 | 0.25 |
| 16 | 4dqp_C_DC9_DA10 | A-B | AB01 | 76 | 0.11 |
| 17 | 4dqp_C_DA10_DG11 | BBB | BB00 | 78 | 0.16 |
| 18 | 4dqp_C_DG11_DG12 | BBB | BB00 | 75 | 0.13 |
| 19 | 4dqp_E_DC21_DC22 | A-B | AB04 | 22 | 0.35 |
| 20 | 4dqp_E_DC22_DT23 | BBB | BB01 | 80 | 0.09 |
| 21 | 4dqp_E_DT23_DG24 | BBB | BB00 | 60 | 0.24 |
| 22 | 4dqp_E_DG24_DA25 | B-A | BA13 | 85 | 0.07 |
| 23 | 4dqp_E_DA25_DC26 | AAA | AA04 | 29 | 0.25 |
| 24 | 4dqp_E_DC26_DT27 | AAA | AA00 | 20 | 0.27 |
| 25 | 4dqp_E_DT27_DC28 | AAA | AA00 | 83 | 0.20 |
| 26 | 4dqp_F_DA1_DT2 | BBB | BB00 | 56 | 0.36 |
| 27 | 4dqp_F_DT2_DG3 | NAN | NANT | 0 | 1.39 |
| 28 | 4dqp_F_DG3_DG4 | AAA | AA00 | 39 | 0.31 |
| 29 | 4dqp_F_DG4_DG5 | AAA | AA00 | 62 | 0.27 |
| 30 | 4dqp_F_DG5_DA6 | AAw | AA01 | 91 | 0.13 |
| 31 | 4dqp_F_DA6_DG7 | A-B | AB04 | 85 | 0.15 |
| 32 | 4dqp_F_DG7_DT8 | BBB | BB00 | 83 | 0.21 |
| 33 | 4dqp_F_DT8_DC9 | B-A | BA05 | 91 | 0.23 |
| 34 | 4dqp_F_DC9_DA10 | A-B | AB01 | 23 | 0.10 |
| 35 | 4dqp_F_DA10_DG11 | BBB | BB00 | 93 | 0.11 |
| 36 | 4dqp_F_DG11_DG12 | BBB | BB00 | 85 | 0.16 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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