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Conformers: ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND UBDA MOTIFS

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014cyc_C_DG1_DT2NANNANT00.71 BB03
024cyc_C_DT2_DC3AAAAA02310.56 AA02
034cyc_C_DC3_DG4NANNANT00.20 AB03
044cyc_C_DG4_DC5BBBBB00700.30 BB00
054cyc_C_DC5_DC6B-ABA05630.19 BA05
064cyc_C_DC6_DA7BBBBB01600.34 BB01
074cyc_C_DA7_DT8B-ABA01820.24 BA01
084cyc_C_DT8_DA9A-BAB01720.20 AB01
094cyc_C_DA9_DA10BBBBB00310.34 BB00
104cyc_C_DA10_DA11BBBBB00360.28 BB00
114cyc_C_DA11_DT12BBBBB01860.15 BB01
124cyc_C_DT12_DC13BBBBB00360.28 BB00
134cyc_C_DC13_DA14BBBBB00820.31 BB00
144cyc_C_DA14_DC15BB2BB07870.24 BB07
154cyc_D_DA16_DC17SYNBBS1670.37 BBS1
164cyc_D_DC17_DG18BBBBB00460.25 BB00
174cyc_D_DG18_DT19miBBB10590.38 BB10
184cyc_D_DT19_DG20B12BB04310.28 BB04
194cyc_D_DG20_DA21BBBBB00660.28 BB00
204cyc_D_DA21_DT22BBBBB00730.23 BB00
214cyc_D_DT22_DT23BBBBB00790.26 BB00
224cyc_D_DT23_DT24BBwBB03640.24 BB03
234cyc_D_DT24_DA25BBBBB01570.33 BB01
244cyc_D_DA25_DT26BBBBB01280.38 BB01
254cyc_D_DT26_DG27A-BAB03780.13 AB03
264cyc_D_DG27_DG28B12BB04310.18 BB04
274cyc_D_DG28_DC29BBBBB00710.21 BB00
284cyc_D_DC29_DG30B12BB04580.20 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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