Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the human PARP-1 DNA binding domain in complex with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4av1_X_DA1_DA2 | NAN | NANT | 0 | 0.85 |
| 02 | 4av1_X_DA2_DG3 | NAN | NANT | 0 | 0.65 |
| 03 | 4av1_X_DG3_DT4 | BBB | BB01 | 27 | 0.36 |
| 04 | 4av1_X_DT4_DG5 | BBB | BB01 | 77 | 0.19 |
| 05 | 4av1_X_DG5_DT6 | B-A | BA05 | 68 | 0.29 |
| 06 | 4av1_X_DT6_DT7 | BBB | BB01 | 24 | 0.27 |
| 07 | 4av1_X_DT7_DG8 | B-A | BA05 | 45 | 0.37 |
| 08 | 4av1_X_DG8_DC9 | NAN | NANT | 0 | 0.52 |
| 09 | 4av1_X_DC9_DA10 | BBw | BB16 | 72 | 0.40 |
| 10 | 4av1_X_DA10_DT11 | BBB | BB00 | 81 | 0.22 |
| 11 | 4av1_X_DT11_DT12 | B-A | BA01 | 65 | 0.23 |
| 12 | 4av1_Y_DT1_DA2 | NAN | NANT | 0 | 0.52 |
| 13 | 4av1_Y_DA2_DA3 | B12 | BB04 | 78 | 0.26 |
| 14 | 4av1_Y_DA3_DT4 | miB | BB13 | 70 | 0.16 |
| 15 | 4av1_Y_DT4_DG5 | NAN | NANT | 0 | 0.62 |
| 16 | 4av1_Y_DG5_DC6 | NAN | NANT | 0 | 0.55 |
| 17 | 4av1_Y_DC6_DA7 | BBB | BB00 | 22 | 0.25 |
| 18 | 4av1_Y_DA7_DA8 | BBB | BB00 | 91 | 0.17 |
| 19 | 4av1_Y_DA8_DC9 | B12 | BB04 | 48 | 0.21 |
| 20 | 4av1_Y_DC9_DA10 | BBB | BB00 | 54 | 0.27 |
| 21 | 4av1_Y_DA10_DC11 | BBw | BB02 | 65 | 0.21 |
| 22 | 4av1_Y_DC11_DT12 | BBB | BB01 | 9 | 0.43 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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