Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
New insights into the mechanism of bacterial Type III toxin-antitoxin systems: selective toxin inhibition by a non-coding RNA pseudoknot
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4ato_G_A1_A2 | AAA | AA00 | 56 | 0.29 |
| 02 | 4ato_G_A2_A3 | AAA | AA00 | 52 | 0.30 |
| 03 | 4ato_G_A3_U4 | A-B | AB04 | 71 | 0.28 |
| 04 | 4ato_G_U4_U5 | NAN | NANT | 0 | 1.30 |
| 05 | 4ato_G_U5_G6 | AAA | AA08 | 26 | 0.60 |
| 06 | 4ato_G_G6_G7 | AAw | AA01 | 94 | 0.11 |
| 07 | 4ato_G_G7_U8 | AAA | AA00 | 66 | 0.23 |
| 08 | 4ato_G_U8_G9 | ICL | IC01 | 89 | 0.16 |
| 09 | 4ato_G_G9_U10 | NAN | NANT | 0 | 2.01 |
| 10 | 4ato_G_U10_A11 | NAN | NANT | 0 | 0.53 |
| 11 | 4ato_G_A11_A12 | NAN | NANT | 0 | 0.41 |
| 12 | 4ato_G_A12_C13 | AAA | AA00 | 76 | 0.19 |
| 13 | 4ato_G_C13_C14 | AAA | AA00 | 82 | 0.19 |
| 14 | 4ato_G_C14_U15 | AAA | AA00 | 95 | 0.10 |
| 15 | 4ato_G_U15_U16 | AAA | AA00 | 83 | 0.28 |
| 16 | 4ato_G_U16_A17 | AAA | AA00 | 89 | 0.21 |
| 17 | 4ato_G_A17_C18 | AAA | AA00 | 85 | 0.26 |
| 18 | 4ato_G_C18_C19 | A-B | AB05 | 83 | 0.28 |
| 19 | 4ato_G_C19_G20 | OPN | OP22 | 70 | 0.45 |
| 20 | 4ato_G_G20_U21 | OPN | OP21 | 70 | 0.27 |
| 21 | 4ato_G_U21_A22 | NAN | NANT | 0 | 0.55 |
| 22 | 4ato_G_A22_G23 | NAN | NANT | 0 | 0.94 |
| 23 | 4ato_G_G23_U24 | OPN | OP15 | 88 | 0.27 |
| 24 | 4ato_G_U24_A25 | AAA | AA00 | 79 | 0.18 |
| 25 | 4ato_G_A25_G26 | AAA | AA00 | 86 | 0.14 |
| 26 | 4ato_G_G26_G27 | AAw | AA01 | 92 | 0.16 |
| 27 | 4ato_G_G27_U28 | AAA | AA08 | 74 | 0.24 |
| 28 | 4ato_G_U28_G29 | AAA | AA00 | 65 | 0.32 |
| 29 | 4ato_G_G29_C30 | AAA | AA00 | 71 | 0.28 |
| 30 | 4ato_G_C30_U31 | A-B | AB04 | 27 | 0.48 |
| 31 | 4ato_G_U31_A32 | NAN | NANT | 0 | 0.72 |
| 32 | 4ato_G_A32_A33 | NAN | NANT | 0 | 0.84 |
| 33 | 4ato_G_A33_A2334 | NAN | NANT | 0 | 0.94 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|