Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.8 A resolution (CPD 4)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 46 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4a0b_G_DG2_DG3 | miB | BB10 | 57 | 0.33 |
| 02 | 4a0b_G_DG3_DT4 | NAN | NANT | 0 | 0.41 |
| 03 | 4a0b_G_DT4_DG5 | B12 | BB04 | 39 | 0.30 |
| 04 | 4a0b_G_DG5_DA6 | B12 | BB04 | 81 | 0.34 |
| 05 | 4a0b_G_DA6_DA7 | NAN | NANT | 0 | 0.38 |
| 06 | 4a0b_G_DA7_DT8 | BBB | BB00 | 55 | 0.20 |
| 07 | 4a0b_G_DA11_DG12 | BBB | BB00 | 75 | 0.21 |
| 08 | 4a0b_G_DG12_DC13 | BBB | BB00 | 41 | 0.29 |
| 09 | 4a0b_G_DC13_DA14 | B12 | BB04 | 52 | 0.38 |
| 10 | 4a0b_G_DA14_DG15 | BBB | BB00 | 32 | 0.53 |
| 11 | 4a0b_G_DG15_DG16 | NAN | NANT | 0 | 0.58 |
| 12 | 4a0b_H_DC2_DT3 | miB | BB15 | 74 | 0.22 |
| 13 | 4a0b_H_DT3_DG4 | BB2 | BB07 | 66 | 0.20 |
| 14 | 4a0b_H_DG4_DC5 | BBB | BB00 | 78 | 0.20 |
| 15 | 4a0b_H_DC5_DT6 | BBB | BB00 | 63 | 0.30 |
| 16 | 4a0b_H_DT6_DC7 | NAN | NANT | 0 | 0.40 |
| 17 | 4a0b_H_DC7_DC8 | NAN | NANT | 0 | 0.71 |
| 18 | 4a0b_H_DC8_DA9 | NAN | NANT | 0 | 0.57 |
| 19 | 4a0b_H_DA9_DT10 | BBB | BB00 | 22 | 0.31 |
| 20 | 4a0b_H_DT10_DT11 | B12 | BB04 | 20 | 0.33 |
| 21 | 4a0b_H_DT11_DC12 | B12 | BB04 | 17 | 0.36 |
| 22 | 4a0b_H_DC12_DA13 | BBB | BB00 | 29 | 0.47 |
| 23 | 4a0b_H_DA13_DC14 | BBB | BB00 | 48 | 0.29 |
| 24 | 4a0b_H_DC14_DC15 | NAN | NANT | 0 | 0.76 |
| 25 | 4a0b_I_DG2_DG3 | miB | BB10 | 58 | 0.32 |
| 26 | 4a0b_I_DG3_DT4 | miB | BB10 | 32 | 0.43 |
| 27 | 4a0b_I_DT4_DG5 | miB | BB10 | 48 | 0.33 |
| 28 | 4a0b_I_DG5_DA6 | NAN | NANT | 0 | 0.36 |
| 29 | 4a0b_I_DA6_DA7 | NAN | NANT | 0 | 0.42 |
| 30 | 4a0b_I_DA7_DT8 | NAN | NANT | 0 | 0.38 |
| 31 | 4a0b_I_DA11_DG12 | BBB | BB00 | 85 | 0.23 |
| 32 | 4a0b_I_DG12_DC13 | BBB | BB00 | 69 | 0.28 |
| 33 | 4a0b_I_DC13_DA14 | B12 | BB04 | 52 | 0.23 |
| 34 | 4a0b_I_DA14_DG15 | BBB | BB00 | 63 | 0.38 |
| 35 | 4a0b_J_DC2_DT3 | BBw | BB17 | 46 | 0.36 |
| 36 | 4a0b_J_DT3_DG4 | miB | BB10 | 23 | 0.57 |
| 37 | 4a0b_J_DG4_DC5 | B12 | BB04 | 19 | 0.23 |
| 38 | 4a0b_J_DC5_DT6 | BBB | BB00 | 30 | 0.18 |
| 39 | 4a0b_J_DT6_DC7 | NAN | NANT | 0 | 0.40 |
| 40 | 4a0b_J_DC7_DC8 | NAN | NANT | 0 | 0.78 |
| 41 | 4a0b_J_DC8_DA9 | NAN | NANT | 0 | 0.64 |
| 42 | 4a0b_J_DA9_DT10 | BBB | BB00 | 27 | 0.28 |
| 43 | 4a0b_J_DT10_DT11 | B12 | BB04 | 25 | 0.28 |
| 44 | 4a0b_J_DT11_DC12 | B12 | BB04 | 16 | 0.29 |
| 45 | 4a0b_J_DC12_DA13 | BBB | BB00 | 35 | 0.43 |
| 46 | 4a0b_J_DA13_DC14 | BBB | BB00 | 79 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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