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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of hsDDB1-drDDB2 bound to a 15 bp CPD-duplex (purine at D-1 position) at 3.1 A resolution (CPD 2)

Results of the assignment of 25 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
014a09_G_DG1_DG2miBBB10840.35 BB10
024a09_G_DG2_DT3miBBB10510.31 BB10
034a09_G_DT3_DG4BBBBB00800.28 BB00
044a09_G_DG4_DA5miBBB10800.37 BB10
054a09_G_DA5_DA6NANNANT00.34 BB10
064a09_G_DA6_DA7NANNANT00.42 BB10
074a09_G_DA10_DG11miBBB15810.17 BB15
084a09_G_DG11_DC12BBBBB00820.18 BB00
094a09_G_DC12_DA13miBBB10840.40 BB10
104a09_G_DA13_DG14miBBB10470.22 BB10
114a09_G_DG14_DG15BBBBB00450.32 BB00
124a09_H_DC1_DC2BB2BB07410.40 BB07
134a09_H_DC2_DT3BBBBB00550.32 BB00
144a09_H_DT3_DG4miBBB10170.47 BB10
154a09_H_DG4_DC5miBBB15490.21 BB15
164a09_H_DC5_DT6BBBBB00730.18 BB00
174a09_H_DT6_DC7NANNANT00.41 BA05
184a09_H_DC7_DC8NANNANT00.71 AB05
194a09_H_DC8_DT9NANNANT00.66 OP22
204a09_H_DT9_DT10miBBB15550.14 BB15
214a09_H_DT10_DT11BBBBB00430.24 BB00
224a09_H_DT11_DC12miBBB10560.28 BB10
234a09_H_DC12_DA13miBBB10650.43 BB10
244a09_H_DA13_DC14BBBBB00580.29 BB00
254a09_H_DC14_DC15BBBBB00650.41 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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