DNATCO v4.1: results

CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITE

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	462d_A_C1_U2	AAA	AA00	80	0.24	AA00
02	462d_A_U2_U3	AAA	AA00	89	0.15	AA00
03	462d_A_U3_G4	AAA	AA08	73	0.22	AA08
04	462d_A_G4_C5	AAA	AA00	68	0.17	AA00
05	462d_A_C5_U6	AAA	AA00	90	0.17	AA00
06	462d_A_U6_G7	AAA	AA00	72	0.20	AA00
07	462d_A_G7_A8	NAN	NANT	0	1.60	OP29
08	462d_A_A8_G9	NAN	NANT	0	0.95	OPS1
09	462d_A_G9_G10	AAA	AA00	25	0.36	AA00
10	462d_A_G10_U11	AAA	AA00	65	0.23	AA00
11	462d_A_U11_G12	AAA	AA00	66	0.21	AA00
12	462d_A_G12_C13	AAA	AA00	94	0.14	AA00
13	462d_A_C13_A14	AAA	AA00	94	0.11	AA00
14	462d_A_A14_C15	AAA	AA00	84	0.15	AA00
15	462d_A_C15_A16	AAA	AA08	78	0.22	AA08
16	462d_A_A16_C17	AAA	AA00	64	0.27	AA00
17	462d_A_C17_A18	AAA	AA00	95	0.12	AA00
18	462d_A_A18_G19	AAA	AA00	89	0.12	AA00
19	462d_A_G19_C20	AAA	AA00	61	0.21	AA00
20	462d_A_C20_A21	AAA	AA00	71	0.22	AA00
21	462d_A_A21_A22	AAA	AA00	81	0.14	AA00
22	462d_A_A22_G23	AAA	AA00	75	0.18	AA00
23	462d_B_C1_U2	AAA	AA00	46	0.28	AA00
24	462d_B_U2_U3	AAA	AA08	86	0.17	AA08
25	462d_B_U3_G4	AAA	AA08	59	0.24	AA08
26	462d_B_G4_C5	AAA	AA00	75	0.18	AA00
27	462d_B_C5_U6	AAA	AA00	91	0.16	AA00
28	462d_B_U6_G.A7	AAA	AA00	74	0.16	AA00
29	462d_B_U6_G.B7	AAA	AA00	77	0.18	AA00
30	462d_B_G.A7_A.A8	NAN	NANT	0	1.26	OP30
31	462d_B_G.B7_A.B8	NAN	NANT	0	1.09	OP09
32	462d_B_A.A8_G.A9	OPN	OP11	56	0.44	OP11
33	462d_B_A.B8_G.B9	NAN	NANT	0	0.65	OP12
34	462d_B_G.A9_G10	AAA	AA00	31	0.34	AA00
35	462d_B_G.B9_G10	AAA	AA00	18	0.39	AA00
36	462d_B_G10_U11	AAA	AA00	70	0.23	AA00
37	462d_B_U11_G12	AAA	AA00	76	0.17	AA00
38	462d_B_G12_C13	AAA	AA00	83	0.17	AA00
39	462d_B_C13_A14	AAA	AA00	97	0.11	AA00
40	462d_B_A14_C15	AAA	AA08	88	0.12	AA08
41	462d_B_C15_A16	AAA	AA00	94	0.14	AA00
42	462d_B_A16_C17	AAA	AA00	83	0.19	AA00
43	462d_B_C17_A18	AAA	AA00	71	0.17	AA00
44	462d_B_A18_G19	AAA	AA00	93	0.09	AA00
45	462d_B_G19_C20	AAA	AA00	69	0.18	AA00
46	462d_B_C20_A21	AAA	AA00	88	0.14	AA00
47	462d_B_A21_A22	AAA	AA00	90	0.10	AA00
48	462d_B_A22_G23	AAA	AA00	54	0.22	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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