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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of nucleosome core particle in the presence of histone variant involved in reprogramming

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013x1v_I_DA1_DT2BBwBB03700.32 BB03
0023x1v_I_DT2_DC3BBwBB02410.39 BB02
0033x1v_I_DC3_DA4BBBBB00400.42 BB00
0043x1v_I_DA4_DA5BBBBB00290.21 BB00
0053x1v_I_DA5_DT6BBwBB02120.26 BB02
0063x1v_I_DT6_DA7miBBB15660.30 BB15
0073x1v_I_DA7_DT8miBBB15690.31 BB15
0083x1v_I_DT8_DC9BBwBB02340.28 BB02
0093x1v_I_DC9_DC10NANNANT00.44 BB10
0103x1v_I_DC10_DA11B12BB04730.20 BB04
0113x1v_I_DA11_DC12BBBBB00100.30 BB00
0123x1v_I_DC12_DC13BBwBB02670.30 BB02
0133x1v_I_DC13_DT14BBBBB00520.33 BB00
0143x1v_I_DT14_DG15NANNANT00.59 BB04
0153x1v_I_DG15_DC16miBBB15240.31 BB15
0163x1v_I_DC16_DA17BB2BB07220.35 BB07
0173x1v_I_DA17_DG18BBBBB00590.26 BB00
0183x1v_I_DG18_DA19BBBBB00650.35 BB00
0193x1v_I_DA19_DT20BBwBB02660.22 BB02
0203x1v_I_DT20_DT21BBBBB00300.26 BB00
0213x1v_I_DT21_DC22BBBBB00840.26 BB00
0223x1v_I_DC22_DT23BBwBB02530.30 BB02
0233x1v_I_DT23_DA24BBBBB00310.24 BB00
0243x1v_I_DA24_DC25NANNANT00.58 BB00
0253x1v_I_DC25_DC26BBBBB00730.33 BB00
0263x1v_I_DC26_DA27BB2BB07280.28 BB07
0273x1v_I_DA27_DA28BBBBB00840.20 BB00
0283x1v_I_DA28_DA29BB2BB08860.23 BB08
0293x1v_I_DA29_DA30BBBBB00410.30 BB00
0303x1v_I_DA30_DG31BBBBB00870.12 BB00
0313x1v_I_DG31_DT32BBwBB02780.14 BB02
0323x1v_I_DT32_DG33BBBBB00610.25 BB00
0333x1v_I_DG33_DT34BBBBB00530.37 BB00
0343x1v_I_DT34_DA35BBBBB00710.28 BB00
0353x1v_I_DA35_DT36NANNANT00.49 BA10
0363x1v_I_DT36_DT37NANNANT00.46 BB05
0373x1v_I_DT37_DT38miBBB15200.44 BB15
0383x1v_I_DT38_DG39BB2BB07450.31 BB07
0393x1v_I_DG39_DG40NANNANT00.69 BB02
0403x1v_I_DG40_DA41NANNANT00.42 BB16
0413x1v_I_DA41_DA42NANNANT00.27 BB03
0423x1v_I_DA42_DA43miBBB15690.28 BB15
0433x1v_I_DA43_DC44BBwBB02740.20 BB02
0443x1v_I_DC44_DT45miBBB12230.40 BB12
0453x1v_I_DT45_DG46NANNANT00.76 BB11
0463x1v_I_DG46_DC47BBwBB02300.31 BB02
0473x1v_I_DC47_DT48BB2BB08520.43 BB08
0483x1v_I_DT48_DC49miBBB10260.29 BB10
0493x1v_I_DC49_DC50NANNANT00.43 BB00
0503x1v_I_DC50_DA51BBBBB00230.34 BB00
0513x1v_I_DA51_DT52NANNANT00.32 BB02
0523x1v_I_DT52_DC53NANNANT00.46 BB02
0533x1v_I_DC53_DA54miBBB15670.26 BB15
0543x1v_I_DA54_DA55NANNANT00.60 BB12
0553x1v_I_DA55_DA56NANNANT00.71 BB03
0563x1v_I_DA56_DA57BBBBB00690.35 BB00
0573x1v_I_DA57_DG58miBBB12270.56 BB12
0583x1v_I_DG58_DG59BBBBB00640.36 BB00
0593x1v_I_DG59_DC60BBBBB00620.28 BB00
0603x1v_I_DC60_DA61B12BB04570.21 BB04
0613x1v_I_DA61_DT62BBwBB02650.15 BB02
0623x1v_I_DT62_DG63BBBBB00240.29 BB00
0633x1v_I_DG63_DT64miBBB15660.27 BB15
0643x1v_I_DT64_DT65BBwBB02490.25 BB02
0653x1v_I_DT65_DC66BBBBB00430.23 BB00
0663x1v_I_DC66_DA67BB2BB07860.13 BB07
0673x1v_I_DA67_DG68B12BB04460.50 BB04
0683x1v_I_DG68_DC69BB2BB07560.23 BB07
0693x1v_I_DC69_DT70B12BB04700.23 BB04
0703x1v_I_DT70_DG71BBBBB00340.19 BB00
0713x1v_I_DG71_DA72BBBBB00880.28 BB00
0723x1v_I_DA72_DA73miBBB15910.20 BB15
0733x1v_I_DA73_DT74BBwBB02740.20 BB02
0743x1v_I_DT74_DT75miBBB15740.15 BB15
0753x1v_I_DT75_DC76BBBBB00900.16 BB00
0763x1v_I_DC76_DA77B12BB04710.25 BB04
0773x1v_I_DA77_DG78B12BB04320.39 BB04
0783x1v_I_DG78_DC79BB2BB07420.21 BB07
0793x1v_I_DC79_DT80B12BB04470.32 BB04
0803x1v_I_DT80_DG81B12BB04820.20 BB04
0813x1v_I_DG81_DA82BBBBB00860.22 BB00
0823x1v_I_DA82_DA83miBBB15760.21 BB15
0833x1v_I_DA83_DC84BBwBB02160.40 BB02
0843x1v_I_DC84_DA85B12BB04350.22 BB04
0853x1v_I_DA85_DT86BBwBB02200.28 BB02
0863x1v_I_DT86_DG87BBBBB00770.26 BB00
0873x1v_I_DG87_DC88BB2BB07570.31 BB07
0883x1v_I_DC88_DC89BBBBB00550.23 BB00
0893x1v_I_DC89_DT90BB2BB07640.26 BB07
0903x1v_I_DT90_DT91miBBB15700.25 BB15
0913x1v_I_DT91_DT92BBwBB02650.22 BB02
0923x1v_I_DT92_DT93NANNANT00.37 BB15
0933x1v_I_DT93_DG94NANNANT00.34 BB10
0943x1v_I_DG94_DA95BBBBB00540.39 BB00
0953x1v_I_DA95_DT96BBwBB02370.22 BB02
0963x1v_I_DT96_DG97miBBB15400.38 BB15
0973x1v_I_DG97_DG98BBBBB00650.24 BB00
0983x1v_I_DG98_DA99B12BB04500.41 BB04
0993x1v_I_DA99_DG100B12BB04290.60 BB04
1003x1v_I_DG100_DC101NANNANT00.41 BB08
1013x1v_I_DC101_DA102BBBBB00480.56 BB00
1023x1v_I_DA102_DG103NANNANT00.41 BB15
1033x1v_I_DG103_DT104BBwBB02730.17 BB02
1043x1v_I_DT104_DT105BBwBB02670.28 BB02
1053x1v_I_DT105_DT106miBBB15600.23 BB15
1063x1v_I_DT106_DC107BBBBB00360.21 BB00
1073x1v_I_DC107_DC108BBwBB11480.34 BB11
1083x1v_I_DC108_DA109BB2BB07250.46 BB07
1093x1v_I_DA109_DA110BBBBB00770.19 BB00
1103x1v_I_DA110_DA111B12BB04720.16 BB04
1113x1v_I_DA111_DT112miBBB15450.33 BB15
1123x1v_I_DT112_DA113miBBB15880.16 BB15
1133x1v_I_DA113_DC114miBBB13770.30 BB13
1143x1v_I_DC114_DA115BBBBB00640.45 BB00
1153x1v_I_DA115_DC116BBwBB02380.34 BB02
1163x1v_I_DC116_DT117miBBB15610.29 BB15
1173x1v_I_DT117_DT118B12BB05320.31 BB05
1183x1v_I_DT118_DT119miBBB15540.40 BB15
1193x1v_I_DT119_DT120B12BB04420.30 BB04
1203x1v_I_DT120_DG121B12BB04430.29 BB04
1213x1v_I_DG121_DG122miBBB15490.29 BB15
1223x1v_I_DG122_DT123miBBB15650.17 BB15
1233x1v_I_DT123_DA124BBBBB00760.22 BB00
1243x1v_I_DA124_DG125BBwBB03490.58 BB03
1253x1v_I_DG125_DA126BBBBB00680.24 BB00
1263x1v_I_DA126_DA127BBBBB00870.15 BB00
1273x1v_I_DA127_DT128miBBB13760.21 BB13
1283x1v_I_DT128_DC129BBwBB02270.47 BB02
1293x1v_I_DC129_DT130BBBBB00220.56 BB00
1303x1v_I_DT130_DG131BB2BB08270.63 BB08
1313x1v_I_DG131_DC132BBBBB00190.49 BB00
1323x1v_I_DC132_DA133BB2BB07590.25 BB07
1333x1v_I_DA133_DG134BBwBB02670.25 BB02
1343x1v_I_DG134_DG135NANNANT00.29 BB15
1353x1v_I_DG135_DT136miBBB12410.46 BB12
1363x1v_I_DT136_DG137NANNANT00.73 AB03
1373x1v_I_DG137_DG138BBBBB00260.38 BB00
1383x1v_I_DG138_DA139miBBB15640.41 BB15
1393x1v_I_DA139_DT140NANNANT00.34 BB15
1403x1v_I_DT140_DA141NANNANT00.46 BA05
1413x1v_I_DA141_DT142miBBB15720.23 BB15
1423x1v_I_DT142_DT143miBBB15720.27 BB15
1433x1v_I_DT143_DG144BBBBB00590.30 BB00
1443x1v_I_DG144_DA145BBBBB00830.21 BB00
1453x1v_I_DA145_DT146BBwBB02160.36 BB02
1463x1v_J_DA147_DT148BBwBB03740.20 BB03
1473x1v_J_DT148_DC149BBwBB02310.48 BB02
1483x1v_J_DC149_DA150BBBBB00340.32 BB00
1493x1v_J_DA150_DA151BBBBB00290.13 BB00
1503x1v_J_DA151_DT152miBBB13410.37 BB13
1513x1v_J_DT152_DA153miBBB15690.45 BB15
1523x1v_J_DA153_DT154miBBB15820.25 BB15
1533x1v_J_DT154_DC155BBwBB02260.32 BB02
1543x1v_J_DC155_DC156NANNANT00.54 BB10
1553x1v_J_DC156_DA157BBwBB11520.44 BB11
1563x1v_J_DA157_DC158BBBBB00100.40 BB00
1573x1v_J_DC158_DC159BBwBB02740.17 BB02
1583x1v_J_DC159_DT160BBBBB00550.30 BB00
1593x1v_J_DT160_DG161NANNANT00.44 BB04
1603x1v_J_DG161_DC162BBwBB0280.42 BB02
1613x1v_J_DC162_DA163BB2BB07260.29 BB07
1623x1v_J_DA163_DG164BBBBB00630.31 BB00
1633x1v_J_DG164_DA165NANNANT00.34 BB05
1643x1v_J_DA165_DT166BBwBB02600.33 BB02
1653x1v_J_DT166_DT167BBBBB00240.25 BB00
1663x1v_J_DT167_DC168BBBBB00750.29 BB00
1673x1v_J_DC168_DT169BBwBB02500.27 BB02
1683x1v_J_DT169_DA170BBBBB00120.28 BB00
1693x1v_J_DA170_DC171NANNANT00.45 BB02
1703x1v_J_DC171_DC172BBwBB03590.35 BB03
1713x1v_J_DC172_DA173NANNANT00.55 BB08
1723x1v_J_DA173_DA174BBBBB00780.21 BB00
1733x1v_J_DA174_DA175BB2BB08660.42 BB08
1743x1v_J_DA175_DA176BBBBB00590.28 BB00
1753x1v_J_DA176_DG177BBBBB00920.17 BB00
1763x1v_J_DG177_DT178BBwBB02790.24 BB02
1773x1v_J_DT178_DG179BBBBB00600.23 BB00
1783x1v_J_DG179_DT180BBBBB00400.22 BB00
1793x1v_J_DT180_DA181BBBBB00720.26 BB00
1803x1v_J_DA181_DT182NANNANT00.43 BA10
1813x1v_J_DT182_DT183NANNANT00.55 BB00
1823x1v_J_DT183_DT184NANNANT00.42 BB15
1833x1v_J_DT184_DG185BB2BB07830.28 BB07
1843x1v_J_DG185_DG186miBBB15390.33 BB15
1853x1v_J_DG186_DA187NANNANT00.37 BB07
1863x1v_J_DA187_DA188BBBBB00660.19 BB00
1873x1v_J_DA188_DA189miBBB15640.30 BB15
1883x1v_J_DA189_DC190miBBB12240.36 BB12
1893x1v_J_DC190_DT191NANNANT00.39 BB16
1903x1v_J_DT191_DG192BB2BB07820.21 BB07
1913x1v_J_DG192_DC193BBwBB02240.41 BB02
1923x1v_J_DC193_DT194NANNANT00.50 BB08
1933x1v_J_DT194_DC195NANNANT00.51 BB15
1943x1v_J_DC195_DC196BBBBB00470.39 BB00
1953x1v_J_DC196_DA197BBBBB00560.26 BB00
1963x1v_J_DA197_DT198BBwBB02200.39 BB02
1973x1v_J_DT198_DC199NANNANT00.46 BB02
1983x1v_J_DC199_DA200miBBB15670.20 BB15
1993x1v_J_DA200_DA201miBBB10750.36 BB10
2003x1v_J_DA201_DA202B12BB04130.33 BB04
2013x1v_J_DA202_DA203BBBBB00710.33 BB00
2023x1v_J_DA203_DG204NANNANT00.30 BB10
2033x1v_J_DG204_DG205NANNANT00.46 BB07
2043x1v_J_DG205_DC206NANNANT00.49 BB11
2053x1v_J_DC206_DA207B12BB04280.32 BB04
2063x1v_J_DA207_DT208BBwBB02640.16 BB02
2073x1v_J_DT208_DG209BBBBB00170.27 BB00
2083x1v_J_DG209_DT210miBBB15760.17 BB15
2093x1v_J_DT210_DT211BBwBB02340.38 BB02
2103x1v_J_DT211_DC212BBBBB00220.26 BB00
2113x1v_J_DC212_DA213BB2BB07790.18 BB07
2123x1v_J_DA213_DG214BB2BB07470.28 BB07
2133x1v_J_DG214_DC215BBBBB00630.29 BB00
2143x1v_J_DC215_DT216B12BB04830.18 BB04
2153x1v_J_DT216_DG217BBBBB00300.34 BB00
2163x1v_J_DG217_DA218BBBBB00880.22 BB00
2173x1v_J_DA218_DA219miBBB15810.21 BB15
2183x1v_J_DA219_DT220BBwBB02730.24 BB02
2193x1v_J_DT220_DT221miBBB15730.20 BB15
2203x1v_J_DT221_DC222BBBBB00880.13 BB00
2213x1v_J_DC222_DA223B12BB04820.21 BB04
2223x1v_J_DA223_DG224B12BB04310.29 BB04
2233x1v_J_DG224_DC225BB2BB07160.42 BB07
2243x1v_J_DC225_DT226B12BB04500.29 BB04
2253x1v_J_DT226_DG227B12BB04480.41 BB04
2263x1v_J_DG227_DA228B12BB04680.26 BB04
2273x1v_J_DA228_DA229miBBB15760.22 BB15
2283x1v_J_DA229_DC230BBwBB02250.28 BB02
2293x1v_J_DC230_DA231B12BB04610.22 BB04
2303x1v_J_DA231_DT232NANNANT00.32 BB02
2313x1v_J_DT232_DG233BBBBB00660.25 BB00
2323x1v_J_DG233_DC234BB2BB07390.33 BB07
2333x1v_J_DC234_DC235BBBBB00720.14 BB00
2343x1v_J_DC235_DT236BB2BB07670.18 BB07
2353x1v_J_DT236_DT237BBBBB00210.16 BB00
2363x1v_J_DT237_DT238BBwBB02500.31 BB02
2373x1v_J_DT238_DT239NANNANT00.46 BB15
2383x1v_J_DT239_DG240miBBB10360.28 BB10
2393x1v_J_DG240_DA241BBwBB0390.50 BB03
2403x1v_J_DA241_DT242BBwBB02210.40 BB02
2413x1v_J_DT242_DG243miBBB15600.25 BB15
2423x1v_J_DG243_DG244BBBBB00820.16 BB00
2433x1v_J_DG244_DA245B12BB04630.30 BB04
2443x1v_J_DA245_DG246B12BB04560.35 BB04
2453x1v_J_DG246_DC247NANNANT00.39 BB02
2463x1v_J_DC247_DA248NANNANT00.77 BB11
2473x1v_J_DA248_DG249miBBB15230.32 BB15
2483x1v_J_DG249_DT250BBwBB02690.29 BB02
2493x1v_J_DT250_DT251BBwBB02570.37 BB02
2503x1v_J_DT251_DT252miBBB15550.24 BB15
2513x1v_J_DT252_DC253BBBBB00340.29 BB00
2523x1v_J_DC253_DC254BBwBB11480.41 BB11
2533x1v_J_DC254_DA255BB2BB07490.35 BB07
2543x1v_J_DA255_DA256BBBBB00760.19 BB00
2553x1v_J_DA256_DA257BBBBB00650.25 BB00
2563x1v_J_DA257_DT258miBBB15310.31 BB15
2573x1v_J_DT258_DA259BBBBB00100.28 BB00
2583x1v_J_DA259_DC260NANNANT00.38 BB02
2593x1v_J_DC260_DA261BBBBB00630.41 BB00
2603x1v_J_DA261_DC262BBwBB02370.38 BB02
2613x1v_J_DC262_DT263miBBB15630.32 BB15
2623x1v_J_DT263_DT264miBBB13730.23 BB13
2633x1v_J_DT264_DT265miBBB15460.51 BB15
2643x1v_J_DT265_DT266B12BB04420.26 BB04
2653x1v_J_DT266_DG267B12BB04220.38 BB04
2663x1v_J_DG267_DG268miBBB15690.21 BB15
2673x1v_J_DG268_DT269miBBB15560.26 BB15
2683x1v_J_DT269_DA270BBBBB00790.33 BB00
2693x1v_J_DA270_DG271BBwBB03520.37 BB03
2703x1v_J_DG271_DA272BBBBB00780.20 BB00
2713x1v_J_DA272_DA273BBBBB00940.13 BB00
2723x1v_J_DA273_DT274B12BB05120.44 BB05
2733x1v_J_DT274_DC275BBwBB02350.37 BB02
2743x1v_J_DC275_DT276BBwBB02200.35 BB02
2753x1v_J_DT276_DG277BB2BB08220.52 BB08
2763x1v_J_DG277_DC278BBBBB00300.46 BB00
2773x1v_J_DC278_DA279BB2BB07760.31 BB07
2783x1v_J_DA279_DG280BBwBB02400.39 BB02
2793x1v_J_DG280_DG281miBBB15190.30 BB15
2803x1v_J_DG281_DT282NANNANT00.53 BB05
2813x1v_J_DT282_DG283NANNANT00.40 AB03
2823x1v_J_DG283_DG284NANNANT00.51 BB00
2833x1v_J_DG284_DA285miBBB15440.40 BB15
2843x1v_J_DA285_DT286NANNANT00.28 BB15
2853x1v_J_DT286_DA287NANNANT00.49 BA05
2863x1v_J_DA287_DT288miBBB15630.26 BB15
2873x1v_J_DT288_DT289miBBB15720.24 BB15
2883x1v_J_DT289_DG290BBBBB00530.21 BB00
2893x1v_J_DG290_DA291BBBBB00740.37 BB00
2903x1v_J_DA291_DT292BBwBB02130.42 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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