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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of nucleosome core particle in the presence of histone variants involved in reprogramming

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013x1u_I_DA1_DT2BBwBB03660.29 BB03
0023x1u_I_DT2_DC3BBwBB02230.48 BB02
0033x1u_I_DC3_DA4B12BB0480.32 BB04
0043x1u_I_DA4_DA5BBBBB00450.15 BB00
0053x1u_I_DA5_DT6NANNANT00.28 BB05
0063x1u_I_DT6_DA7miBBB15530.39 BB15
0073x1u_I_DA7_DT8BBBBB00240.27 BB00
0083x1u_I_DT8_DC9BBwBB02610.26 BB02
0093x1u_I_DC9_DC10NANNANT00.40 BB15
0103x1u_I_DC10_DA11B12BB04480.35 BB04
0113x1u_I_DA11_DC12BBBBB00130.20 BB00
0123x1u_I_DC12_DC13BBwBB02670.29 BB02
0133x1u_I_DC13_DT14BBBBB00610.32 BB00
0143x1u_I_DT14_DG15B12BB04540.47 BB04
0153x1u_I_DG15_DC16NANNANT00.39 BB15
0163x1u_I_DC16_DA17NANNANT00.44 BB07
0173x1u_I_DA17_DG18B12BB04540.35 BB04
0183x1u_I_DG18_DA19B12BB04370.21 BB04
0193x1u_I_DA19_DT20BBwBB02300.36 BB02
0203x1u_I_DT20_DT21BBBBB00570.30 BB00
0213x1u_I_DT21_DC22BBBBB00890.15 BB00
0223x1u_I_DC22_DT23BBwBB02570.28 BB02
0233x1u_I_DT23_DA24BBBBB00370.19 BB00
0243x1u_I_DA24_DC25NANNANT00.45 BB00
0253x1u_I_DC25_DC26NANNANT00.42 BB17
0263x1u_I_DC26_DA27BB2BB07140.27 BB07
0273x1u_I_DA27_DA28BBBBB00790.18 BB00
0283x1u_I_DA28_DA29BB2BB08550.34 BB08
0293x1u_I_DA29_DA30BBBBB00360.39 BB00
0303x1u_I_DA30_DG31BBBBB00820.13 BB00
0313x1u_I_DG31_DT32BBwBB02560.28 BB02
0323x1u_I_DT32_DG33BBBBB00520.30 BB00
0333x1u_I_DG33_DT34BBBBB00710.33 BB00
0343x1u_I_DT34_DA35BBBBB00660.34 BB00
0353x1u_I_DA35_DT36NANNANT00.32 BB02
0363x1u_I_DT36_DT37BBwBB03640.27 BB03
0373x1u_I_DT37_DT38miBBB15200.41 BB15
0383x1u_I_DT38_DG39NANNANT00.53 BB07
0393x1u_I_DG39_DG40NANNANT00.82 BB02
0403x1u_I_DG40_DA41NANNANT00.68 BB15
0413x1u_I_DA41_DA42NANNANT00.48 BA05
0423x1u_I_DA42_DA43miBBB15680.24 BB15
0433x1u_I_DA43_DC44BBwBB02660.22 BB02
0443x1u_I_DC44_DT45miBBB13260.39 BB13
0453x1u_I_DT45_DG46NANNANT00.65 BB11
0463x1u_I_DG46_DC47NANNANT00.30 BB15
0473x1u_I_DC47_DT48BB2BB08290.60 BB08
0483x1u_I_DT48_DC49miBBB10530.27 BB10
0493x1u_I_DC49_DC50B12BB04290.26 BB04
0503x1u_I_DC50_DA51A-BAB03580.28 AB03
0513x1u_I_DA51_DT52NANNANT00.39 BB02
0523x1u_I_DT52_DC53NANNANT00.59 BB10
0533x1u_I_DC53_DA54BBBBB00230.24 BB00
0543x1u_I_DA54_DA55NANNANT00.66 BB00
0553x1u_I_DA55_DA56NANNANT00.47 BB03
0563x1u_I_DA56_DA57BBBBB00510.40 BB00
0573x1u_I_DA57_DG58miBBB13350.55 BB13
0583x1u_I_DG58_DG59BB2BB07190.43 BB07
0593x1u_I_DG59_DC60miBBB15740.32 BB15
0603x1u_I_DC60_DA61B12BB04340.34 BB04
0613x1u_I_DA61_DT62BBwBB02400.27 BB02
0623x1u_I_DT62_DG63BBBBB00260.22 BB00
0633x1u_I_DG63_DT64BBBBB00360.29 BB00
0643x1u_I_DT64_DT65BBwBB02540.25 BB02
0653x1u_I_DT65_DC66BBBBB00360.22 BB00
0663x1u_I_DC66_DA67B12BB04680.23 BB04
0673x1u_I_DA67_DG68B12BB04340.49 BB04
0683x1u_I_DG68_DC69BB2BB07190.23 BB07
0693x1u_I_DC69_DT70B12BB04450.34 BB04
0703x1u_I_DT70_DG71BBBBB00800.26 BB00
0713x1u_I_DG71_DA72BBBBB00830.26 BB00
0723x1u_I_DA72_DA73miBBB15480.29 BB15
0733x1u_I_DA73_DT74BBwBB02670.29 BB02
0743x1u_I_DT74_DT75miBBB15770.16 BB15
0753x1u_I_DT75_DC76BBBBB00860.14 BB00
0763x1u_I_DC76_DA77B12BB04700.29 BB04
0773x1u_I_DA77_DG78miBBB10470.39 BB10
0783x1u_I_DG78_DC79BB2BB07280.19 BB07
0793x1u_I_DC79_DT80B12BB04440.32 BB04
0803x1u_I_DT80_DG81B12BB04850.15 BB04
0813x1u_I_DG81_DA82BBBBB00820.27 BB00
0823x1u_I_DA82_DA83BBwBB02590.27 BB02
0833x1u_I_DA83_DC84BBwBB02630.25 BB02
0843x1u_I_DC84_DA85BBBBB00180.34 BB00
0853x1u_I_DA85_DT86miBBB15260.21 BB15
0863x1u_I_DT86_DG87BBBBB00700.22 BB00
0873x1u_I_DG87_DC88BB2BB07460.39 BB07
0883x1u_I_DC88_DC89BBBBB00690.26 BB00
0893x1u_I_DC89_DT90BB2BB07400.25 BB07
0903x1u_I_DT90_DT91BBBBB00340.17 BB00
0913x1u_I_DT91_DT92BBwBB02680.25 BB02
0923x1u_I_DT92_DT93miBBB15580.26 BB15
0933x1u_I_DT93_DG94miBBB10510.27 BB10
0943x1u_I_DG94_DA95NANNANT00.51 AB01
0953x1u_I_DA95_DT96NANNANT00.35 BB15
0963x1u_I_DT96_DG97B12BB04530.25 BB04
0973x1u_I_DG97_DG98BBBBB00590.21 BB00
0983x1u_I_DG98_DA99BB2BB07300.27 BB07
0993x1u_I_DA99_DG100B12BB04120.47 BB04
1003x1u_I_DG100_DC101NANNANT00.47 BB08
1013x1u_I_DC101_DA102BBBBB00280.69 BB00
1023x1u_I_DA102_DG103NANNANT00.35 BB10
1033x1u_I_DG103_DT104BBwBB02550.29 BB02
1043x1u_I_DT104_DT105BBBBB00780.17 BB00
1053x1u_I_DT105_DT106miBBB15610.18 BB15
1063x1u_I_DT106_DC107BBBBB00860.13 BB00
1073x1u_I_DC107_DC108BBwBB11630.36 BB11
1083x1u_I_DC108_DA109B12BB04300.59 BB04
1093x1u_I_DA109_DA110BBBBB00640.20 BB00
1103x1u_I_DA110_DA111B12BB04800.13 BB04
1113x1u_I_DA111_DT112BBBBB0080.27 BB00
1123x1u_I_DT112_DA113miBBB15840.23 BB15
1133x1u_I_DA113_DC114miBBB13320.37 BB13
1143x1u_I_DC114_DA115BBBBB00410.39 BB00
1153x1u_I_DA115_DC116BBwBB02270.42 BB02
1163x1u_I_DC116_DT117miBBB15570.24 BB15
1173x1u_I_DT117_DT118BBwBB02120.34 BB02
1183x1u_I_DT118_DT119BBBBB00250.30 BB00
1193x1u_I_DT119_DT120B12BB04580.37 BB04
1203x1u_I_DT120_DG121B12BB04490.34 BB04
1213x1u_I_DG121_DG122miBBB15410.27 BB15
1223x1u_I_DG122_DT123miBBB15260.44 BB15
1233x1u_I_DT123_DA124BBBBB00460.48 BB00
1243x1u_I_DA124_DG125miBBB13140.33 BB13
1253x1u_I_DG125_DA126BBBBB00650.31 BB00
1263x1u_I_DA126_DA127BBBBB00750.27 BB00
1273x1u_I_DA127_DT128BBwBB03240.44 BB03
1283x1u_I_DT128_DC129BBwBB02190.45 BB02
1293x1u_I_DC129_DT130B12BB04370.38 BB04
1303x1u_I_DT130_DG131BB2BB08280.53 BB08
1313x1u_I_DG131_DC132BBBBB00450.30 BB00
1323x1u_I_DC132_DA133BB2BB07110.56 BB07
1333x1u_I_DA133_DG134BBwBB02190.29 BB02
1343x1u_I_DG134_DG135NANNANT00.59 BB10
1353x1u_I_DG135_DT136B-ABA09220.35 BA09
1363x1u_I_DT136_DG137NANNANT00.63 AB03
1373x1u_I_DG137_DG138BBBBB00460.62 BB00
1383x1u_I_DG138_DA139miBBB15470.41 BB15
1393x1u_I_DA139_DT140miBBB15600.29 BB15
1403x1u_I_DT140_DA141BBBBB00150.28 BB00
1413x1u_I_DA141_DT142BBBBB00130.17 BB00
1423x1u_I_DT142_DT143miBBB15820.17 BB15
1433x1u_I_DT143_DG144B12BB04760.22 BB04
1443x1u_I_DG144_DA145BBBBB00590.28 BB00
1453x1u_I_DA145_DT146NANNANT00.45 BB02
1463x1u_J_DA147_DT148BBwBB03750.35 BB03
1473x1u_J_DT148_DC149BBwBB02210.40 BB02
1483x1u_J_DC149_DA150BBBBB0090.38 BB00
1493x1u_J_DA150_DA151BBBBB00640.17 BB00
1503x1u_J_DA151_DT152NANNANT00.65 BB13
1513x1u_J_DT152_DA153miBBB15530.51 BB15
1523x1u_J_DA153_DT154BBBBB00220.33 BB00
1533x1u_J_DT154_DC155BBwBB02670.29 BB02
1543x1u_J_DC155_DC156NANNANT00.43 BB15
1553x1u_J_DC156_DA157BBwBB11720.36 BB11
1563x1u_J_DA157_DC158miBBB15680.28 BB15
1573x1u_J_DC158_DC159BBwBB02880.18 BB02
1583x1u_J_DC159_DT160BBBBB00590.25 BB00
1593x1u_J_DT160_DG161B12BB04540.44 BB04
1603x1u_J_DG161_DC162NANNANT00.48 BB15
1613x1u_J_DC162_DA163NANNANT00.52 BB04
1623x1u_J_DA163_DG164B12BB04270.50 BB04
1633x1u_J_DG164_DA165NANNANT00.40 BA10
1643x1u_J_DA165_DT166BBwBB02260.37 BB02
1653x1u_J_DT166_DT167BBBBB00550.29 BB00
1663x1u_J_DT167_DC168BBBBB00880.20 BB00
1673x1u_J_DC168_DT169BBwBB02480.26 BB02
1683x1u_J_DT169_DA170BBBBB00250.23 BB00
1693x1u_J_DA170_DC171NANNANT00.46 BB11
1703x1u_J_DC171_DC172NANNANT00.40 BB17
1713x1u_J_DC172_DA173BB2BB08600.33 BB08
1723x1u_J_DA173_DA174BBBBB00510.29 BB00
1733x1u_J_DA174_DA175BB2BB08380.44 BB08
1743x1u_J_DA175_DA176BBBBB00540.41 BB00
1753x1u_J_DA176_DG177BBBBB00800.24 BB00
1763x1u_J_DG177_DT178BBwBB02480.36 BB02
1773x1u_J_DT178_DG179BBBBB00540.33 BB00
1783x1u_J_DG179_DT180BBBBB00700.18 BB00
1793x1u_J_DT180_DA181BBBBB00710.31 BB00
1803x1u_J_DA181_DT182NANNANT00.30 BB02
1813x1u_J_DT182_DT183BBBBB00640.21 BB00
1823x1u_J_DT183_DT184miBBB15580.24 BB15
1833x1u_J_DT184_DG185BB2BB07750.33 BB07
1843x1u_J_DG185_DG186NANNANT00.33 BB15
1853x1u_J_DG186_DA187NANNANT00.45 BB07
1863x1u_J_DA187_DA188BBBBB0170.31 BB01
1873x1u_J_DA188_DA189miBBB15740.28 BB15
1883x1u_J_DA189_DC190miBBB13890.15 BB13
1893x1u_J_DC190_DT191BBwBB16350.35 BB16
1903x1u_J_DT191_DG192BB2BB07450.22 BB07
1913x1u_J_DG192_DC193BBwBB02200.34 BB02
1923x1u_J_DC193_DT194BB2BB08630.50 BB08
1933x1u_J_DT194_DC195NANNANT00.53 BB10
1943x1u_J_DC195_DC196B12BB04240.27 BB04
1953x1u_J_DC196_DA197A-BAB03620.24 AB03
1963x1u_J_DA197_DT198NANNANT00.41 BB02
1973x1u_J_DT198_DC199NANNANT00.42 BB10
1983x1u_J_DC199_DA200B12BB04190.29 BB04
1993x1u_J_DA200_DA201miBBB10620.25 BB10
2003x1u_J_DA201_DA202BBBBB00180.24 BB00
2013x1u_J_DA202_DA203BBBBB00700.17 BB00
2023x1u_J_DA203_DG204miBBB10610.40 BB10
2033x1u_J_DG204_DG205BB2BB07900.26 BB07
2043x1u_J_DG205_DC206miBBB15680.29 BB15
2053x1u_J_DC206_DA207B12BB04760.16 BB04
2063x1u_J_DA207_DT208miBBB15650.19 BB15
2073x1u_J_DT208_DG209BBBBB00190.26 BB00
2083x1u_J_DG209_DT210BBBBB00350.26 BB00
2093x1u_J_DT210_DT211BBwBB02370.32 BB02
2103x1u_J_DT211_DC212BBBBB00170.30 BB00
2113x1u_J_DC212_DA213B12BB04750.26 BB04
2123x1u_J_DA213_DG214BB2BB07440.19 BB07
2133x1u_J_DG214_DC215B12BB04150.49 BB04
2143x1u_J_DC215_DT216B12BB04310.34 BB04
2153x1u_J_DT216_DG217BBBBB00590.34 BB00
2163x1u_J_DG217_DA218BBBBB00770.19 BB00
2173x1u_J_DA218_DA219miBBB15450.31 BB15
2183x1u_J_DA219_DT220BBwBB02560.34 BB02
2193x1u_J_DT220_DT221miBBB15720.22 BB15
2203x1u_J_DT221_DC222BBBBB00850.15 BB00
2213x1u_J_DC222_DA223B12BB04830.28 BB04
2223x1u_J_DA223_DG224miBBB10510.30 BB10
2233x1u_J_DG224_DC225BB2BB07260.25 BB07
2243x1u_J_DC225_DT226BB2BB07160.26 BB07
2253x1u_J_DT226_DG227B12BB04510.41 BB04
2263x1u_J_DG227_DA228BBBBB00630.50 BB00
2273x1u_J_DA228_DA229BBwBB02450.33 BB02
2283x1u_J_DA229_DC230BBwBB02500.26 BB02
2293x1u_J_DC230_DA231B12BB04340.33 BB04
2303x1u_J_DA231_DT232miBBB15260.25 BB15
2313x1u_J_DT232_DG233BBBBB00750.26 BB00
2323x1u_J_DG233_DC234BB2BB07380.29 BB07
2333x1u_J_DC234_DC235BBBBB00610.41 BB00
2343x1u_J_DC235_DT236BB2BB07440.22 BB07
2353x1u_J_DT236_DT237BBBBB00490.24 BB00
2363x1u_J_DT237_DT238BBwBB02580.30 BB02
2373x1u_J_DT238_DT239miBBB15490.32 BB15
2383x1u_J_DT239_DG240NANNANT00.40 BB10
2393x1u_J_DG240_DA241NANNANT00.53 BB03
2403x1u_J_DA241_DT242NANNANT00.48 BB15
2413x1u_J_DT242_DG243B12BB04510.41 BB04
2423x1u_J_DG243_DG244BBBBB00610.25 BB00
2433x1u_J_DG244_DA245B12BB04200.48 BB04
2443x1u_J_DA245_DG246B12BB04100.46 BB04
2453x1u_J_DG246_DC247NANNANT00.45 BB05
2463x1u_J_DC247_DA248NANNANT00.71 BB11
2473x1u_J_DA248_DG249miBBB10280.24 BB10
2483x1u_J_DG249_DT250BBwBB02200.41 BB02
2493x1u_J_DT250_DT251NANNANT00.57 BB08
2503x1u_J_DT251_DT252miBBB15550.34 BB15
2513x1u_J_DT252_DC253BBBBB00820.15 BB00
2523x1u_J_DC253_DC254BBwBB11640.17 BB11
2533x1u_J_DC254_DA255B12BB04340.35 BB04
2543x1u_J_DA255_DA256BBBBB00700.29 BB00
2553x1u_J_DA256_DA257BBBBB00620.24 BB00
2563x1u_J_DA257_DT258miBBB15600.26 BB15
2573x1u_J_DT258_DA259miBBB15690.39 BB15
2583x1u_J_DA259_DC260BBwBB03500.22 BB03
2593x1u_J_DC260_DA261BBBBB00320.54 BB00
2603x1u_J_DA261_DC262BBwBB02250.44 BB02
2613x1u_J_DC262_DT263miBBB15700.34 BB15
2623x1u_J_DT263_DT264miBBB13850.14 BB13
2633x1u_J_DT264_DT265BBBBB00160.45 BB00
2643x1u_J_DT265_DT266B12BB04750.28 BB04
2653x1u_J_DT266_DG267B12BB04350.36 BB04
2663x1u_J_DG267_DG268miBBB15360.32 BB15
2673x1u_J_DG268_DT269miBBB15420.33 BB15
2683x1u_J_DT269_DA270BBBBB00520.33 BB00
2693x1u_J_DA270_DG271NANNANT00.43 BB03
2703x1u_J_DG271_DA272BBBBB00760.25 BB00
2713x1u_J_DA272_DA273BBBBB00780.27 BB00
2723x1u_J_DA273_DT274NANNANT00.35 BB03
2733x1u_J_DT274_DC275BBwBB02200.41 BB02
2743x1u_J_DC275_DT276NANNANT00.43 BB10
2753x1u_J_DT276_DG277NANNANT00.59 BB08
2763x1u_J_DG277_DC278BBBBB00390.43 BB00
2773x1u_J_DC278_DA279BB2BB07570.22 BB07
2783x1u_J_DA279_DG280NANNANT00.38 BB02
2793x1u_J_DG280_DG281NANNANT00.46 BB10
2803x1u_J_DG281_DT282B-ABA10470.27 BA10
2813x1u_J_DT282_DG283NANNANT00.53 AB03
2823x1u_J_DG283_DG284BBBBB00680.41 BB00
2833x1u_J_DG284_DA285miBBB15710.28 BB15
2843x1u_J_DA285_DT286miBBB15550.34 BB15
2853x1u_J_DT286_DA287BBBBB00170.22 BB00
2863x1u_J_DA287_DT288BBBBB00160.22 BB00
2873x1u_J_DT288_DT289miBBB15850.18 BB15
2883x1u_J_DT289_DG290BBBBB00550.27 BB00
2893x1u_J_DG290_DA291B12BB04670.20 BB04
2903x1u_J_DA291_DT292BBwBB02240.42 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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