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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of nucleosome core particle consisting of mouse testis specific histone variants H2aa and H2ba

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013x1t_I_DA1_DT2BBwBB03440.47 BB03
0023x1t_I_DT2_DC3NANNANT00.56 BB02
0033x1t_I_DC3_DA4NANNANT00.41 BB11
0043x1t_I_DA4_DA5BBBBB00470.29 BB00
0053x1t_I_DA5_DT6NANNANT00.44 BB02
0063x1t_I_DT6_DA7BBBBB00720.23 BB00
0073x1t_I_DA7_DT8BBBBB00640.22 BB00
0083x1t_I_DT8_DC9BBwBB02900.17 BB02
0093x1t_I_DC9_DC10miBBB15420.36 BB15
0103x1t_I_DC10_DA11BBwBB02190.38 BB02
0113x1t_I_DA11_DC12BBBBB00570.23 BB00
0123x1t_I_DC12_DC13BBwBB02610.27 BB02
0133x1t_I_DC13_DT14BBBBB00610.28 BB00
0143x1t_I_DT14_DG15B12BB04470.37 BB04
0153x1t_I_DG15_DC16NANNANT00.36 BB15
0163x1t_I_DC16_DA17NANNANT00.46 BB07
0173x1t_I_DA17_DG18BBBBB00750.22 BB00
0183x1t_I_DG18_DA19BBBBB00570.34 BB00
0193x1t_I_DA19_DT20BBwBB02430.33 BB02
0203x1t_I_DT20_DT21BBwBB02200.30 BB02
0213x1t_I_DT21_DC22BBBBB00260.24 BB00
0223x1t_I_DC22_DT23BBwBB02570.24 BB02
0233x1t_I_DT23_DA24BBBBB00680.23 BB00
0243x1t_I_DA24_DC25BBwBB03210.51 BB03
0253x1t_I_DC25_DC26BBwBB16690.56 BB16
0263x1t_I_DC26_DA27BB2BB07210.36 BB07
0273x1t_I_DA27_DA28BBBBB00600.18 BB00
0283x1t_I_DA28_DA29B12BB05620.30 BB05
0293x1t_I_DA29_DA30BBBBB00420.35 BB00
0303x1t_I_DA30_DG31BBBBB00870.22 BB00
0313x1t_I_DG31_DT32BBwBB02720.24 BB02
0323x1t_I_DT32_DG33BBBBB00630.26 BB00
0333x1t_I_DG33_DT34miBBB13740.31 BB13
0343x1t_I_DT34_DA35BBBBB00390.53 BB00
0353x1t_I_DA35_DT36miBBB13580.33 BB13
0363x1t_I_DT36_DT37NANNANT00.61 BB02
0373x1t_I_DT37_DT38miBBB10370.33 BB10
0383x1t_I_DT38_DG39B12BB04390.44 BB04
0393x1t_I_DG39_DG40NANNANT00.76 BB02
0403x1t_I_DG40_DA41BBBBB00260.62 BB00
0413x1t_I_DA41_DA42NANNANT00.52 BB03
0423x1t_I_DA42_DA43miBBB15660.28 BB15
0433x1t_I_DA43_DC44BBwBB02230.29 BB02
0443x1t_I_DC44_DT45miBBB13810.21 BB13
0453x1t_I_DT45_DG46NANNANT00.86 BB11
0463x1t_I_DG46_DC47BBwBB02470.33 BB02
0473x1t_I_DC47_DT48BB2BB08420.59 BB08
0483x1t_I_DT48_DC49BBwBB0290.43 BB02
0493x1t_I_DC49_DC50BBBBB00480.35 BB00
0503x1t_I_DC50_DA51BBBBB00400.14 BB00
0513x1t_I_DA51_DT52NANNANT00.40 BB02
0523x1t_I_DT52_DC53NANNANT00.48 BB15
0533x1t_I_DC53_DA54NANNANT00.34 BB15
0543x1t_I_DA54_DA55miBBB12590.30 BB12
0553x1t_I_DA55_DA56BBwBB03410.56 BB03
0563x1t_I_DA56_DA57BBBBB00520.29 BB00
0573x1t_I_DA57_DG58NANNANT00.47 BB12
0583x1t_I_DG58_DG59BBBBB00480.38 BB00
0593x1t_I_DG59_DC60BBBBB00700.28 BB00
0603x1t_I_DC60_DA61BBBBB00720.27 BB00
0613x1t_I_DA61_DT62BBwBB02310.24 BB02
0623x1t_I_DT62_DG63BBBBB00720.14 BB00
0633x1t_I_DG63_DT64miBBB15370.32 BB15
0643x1t_I_DT64_DT65miBBB15740.20 BB15
0653x1t_I_DT65_DC66BBBBB00740.17 BB00
0663x1t_I_DC66_DA67BB2BB07870.30 BB07
0673x1t_I_DA67_DG68BBBBB00470.30 BB00
0683x1t_I_DG68_DC69BB2BB07460.23 BB07
0693x1t_I_DC69_DT70B12BB04770.23 BB04
0703x1t_I_DT70_DG71B12BB04730.34 BB04
0713x1t_I_DG71_DA72B12BB04770.13 BB04
0723x1t_I_DA72_DA73miBBB15850.18 BB15
0733x1t_I_DA73_DT74miBBB15380.15 BB15
0743x1t_I_DT74_DT75miBBB15790.17 BB15
0753x1t_I_DT75_DC76BBBBB00840.21 BB00
0763x1t_I_DC76_DA77BB2BB07590.23 BB07
0773x1t_I_DA77_DG78B12BB04720.36 BB04
0783x1t_I_DG78_DC79BB2BB07580.26 BB07
0793x1t_I_DC79_DT80B12BB04540.47 BB04
0803x1t_I_DT80_DG81B12BB04700.24 BB04
0813x1t_I_DG81_DA82BBBBB00880.20 BB00
0823x1t_I_DA82_DA83BBBBB00920.09 BB00
0833x1t_I_DA83_DC84miBBB15320.20 BB15
0843x1t_I_DC84_DA85B12BB04840.18 BB04
0853x1t_I_DA85_DT86BBwBB02440.24 BB02
0863x1t_I_DT86_DG87BBBBB00610.27 BB00
0873x1t_I_DG87_DC88BB2BB07650.32 BB07
0883x1t_I_DC88_DC89B12BB04510.52 BB04
0893x1t_I_DC89_DT90BB2BB07470.23 BB07
0903x1t_I_DT90_DT91BBBBB00740.14 BB00
0913x1t_I_DT91_DT92BBwBB02400.26 BB02
0923x1t_I_DT92_DT93miBBB15310.25 BB15
0933x1t_I_DT93_DG94NANNANT00.24 BB15
0943x1t_I_DG94_DA95BBBBB00710.34 BB00
0953x1t_I_DA95_DT96NANNANT00.38 BB02
0963x1t_I_DT96_DG97B12BB04760.19 BB04
0973x1t_I_DG97_DG98BBBBB00880.15 BB00
0983x1t_I_DG98_DA99BB2BB07770.25 BB07
0993x1t_I_DA99_DG100BBBBB00800.19 BB00
1003x1t_I_DG100_DC101BB2BB08780.35 BB08
1013x1t_I_DC101_DA102NANNANT00.69 BA10
1023x1t_I_DA102_DG103miBBB15440.34 BB15
1033x1t_I_DG103_DT104BBwBB02730.20 BB02
1043x1t_I_DT104_DT105BBwBB02310.31 BB02
1053x1t_I_DT105_DT106NANNANT00.43 BB15
1063x1t_I_DT106_DC107NANNANT00.35 BB02
1073x1t_I_DC107_DC108BB2BB08310.35 BB08
1083x1t_I_DC108_DA109BB2BB07540.34 BB07
1093x1t_I_DA109_DA110BBBBB00790.20 BB00
1103x1t_I_DA110_DA111BBBBB00760.30 BB00
1113x1t_I_DA111_DT112miBBB15720.29 BB15
1123x1t_I_DT112_DA113BBBBB00650.18 BB00
1133x1t_I_DA113_DC114miBBB13850.27 BB13
1143x1t_I_DC114_DA115BBBBB00520.43 BB00
1153x1t_I_DA115_DC116BBwBB02180.43 BB02
1163x1t_I_DC116_DT117BBBBB00730.20 BB00
1173x1t_I_DT117_DT118BBwBB02740.24 BB02
1183x1t_I_DT118_DT119BBBBB00490.23 BB00
1193x1t_I_DT119_DT120B12BB04480.26 BB04
1203x1t_I_DT120_DG121B12BB04620.26 BB04
1213x1t_I_DG121_DG122BBwBB02560.33 BB02
1223x1t_I_DG122_DT123BBBBB00360.23 BB00
1233x1t_I_DT123_DA124BBBBB00710.33 BB00
1243x1t_I_DA124_DG125BBwBB11750.24 BB11
1253x1t_I_DG125_DA126BBBBB00320.37 BB00
1263x1t_I_DA126_DA127BBBBB00690.29 BB00
1273x1t_I_DA127_DT128miBBB13490.36 BB13
1283x1t_I_DT128_DC129NANNANT00.47 BB02
1293x1t_I_DC129_DT130BBBBB0070.45 BB00
1303x1t_I_DT130_DG131NANNANT00.61 BB02
1313x1t_I_DG131_DC132BBBBB00290.40 BB00
1323x1t_I_DC132_DA133B12BB04590.37 BB04
1333x1t_I_DA133_DG134BBwBB02680.19 BB02
1343x1t_I_DG134_DG135NANNANT00.39 BB10
1353x1t_I_DG135_DT136miBBB12480.54 BB12
1363x1t_I_DT136_DG137BBwBB16170.29 BB16
1373x1t_I_DG137_DG138BBBBB00760.33 BB00
1383x1t_I_DG138_DA139NANNANT00.27 BB11
1393x1t_I_DA139_DT140miBBB15480.24 BB15
1403x1t_I_DT140_DA141BBBBB00710.22 BB00
1413x1t_I_DA141_DT142BBBBB00600.17 BB00
1423x1t_I_DT142_DT143BBBBB00730.20 BB00
1433x1t_I_DT143_DG144B12BB04890.13 BB04
1443x1t_I_DG144_DA145BBBBB00610.20 BB00
1453x1t_I_DA145_DT146NANNANT00.88 BB02
1463x1t_J_DA147_DT148BBwBB03300.33 BB03
1473x1t_J_DT148_DC149BBwBB0290.50 BB02
1483x1t_J_DC149_DA150BBwBB03630.23 BB03
1493x1t_J_DA150_DA151BBBBB00690.24 BB00
1503x1t_J_DA151_DT152miBBB12200.56 BB12
1513x1t_J_DT152_DA153NANNANT00.50 BB03
1523x1t_J_DA153_DT154BBBBB00820.19 BB00
1533x1t_J_DT154_DC155BBwBB02420.33 BB02
1543x1t_J_DC155_DC156miBBB15420.32 BB15
1553x1t_J_DC156_DA157miBBB15390.25 BB15
1563x1t_J_DA157_DC158BBBBB00610.22 BB00
1573x1t_J_DC158_DC159BBwBB02700.18 BB02
1583x1t_J_DC159_DT160BBBBB00390.25 BB00
1593x1t_J_DT160_DG161B12BB04870.30 BB04
1603x1t_J_DG161_DC162NANNANT00.35 BB15
1613x1t_J_DC162_DA163NANNANT00.47 BB04
1623x1t_J_DA163_DG164BBBBB00290.38 BB00
1633x1t_J_DG164_DA165NANNANT00.37 BB05
1643x1t_J_DA165_DT166BBwBB02510.35 BB02
1653x1t_J_DT166_DT167BBwBB02310.34 BB02
1663x1t_J_DT167_DC168BBBBB00370.26 BB00
1673x1t_J_DC168_DT169BBwBB02490.30 BB02
1683x1t_J_DT169_DA170BBBBB00460.24 BB00
1693x1t_J_DA170_DC171NANNANT00.36 BB11
1703x1t_J_DC171_DC172NANNANT00.43 BB03
1713x1t_J_DC172_DA173BBwBB11680.46 BB11
1723x1t_J_DA173_DA174BBBBB00390.33 BB00
1733x1t_J_DA174_DA175B12BB05530.36 BB05
1743x1t_J_DA175_DA176BBBBB00550.38 BB00
1753x1t_J_DA176_DG177BBBBB00910.15 BB00
1763x1t_J_DG177_DT178BBwBB02670.25 BB02
1773x1t_J_DT178_DG179BBBBB00550.29 BB00
1783x1t_J_DG179_DT180BBwBB02220.39 BB02
1793x1t_J_DT180_DA181BBBBB00440.43 BB00
1803x1t_J_DA181_DT182BBwBB02230.43 BB02
1813x1t_J_DT182_DT183NANNANT00.55 BB02
1823x1t_J_DT183_DT184NANNANT00.43 BB15
1833x1t_J_DT184_DG185BB2BB07460.27 BB07
1843x1t_J_DG185_DG186BBBBB00360.38 BB00
1853x1t_J_DG186_DA187BB2BB07590.31 BB07
1863x1t_J_DA187_DA188BBBBB00870.23 BB00
1873x1t_J_DA188_DA189miBBB15560.27 BB15
1883x1t_J_DA189_DC190miBBB13700.28 BB13
1893x1t_J_DC190_DT191BBBBB00420.65 BB00
1903x1t_J_DT191_DG192BB2BB07750.28 BB07
1913x1t_J_DG192_DC193BBwBB02580.23 BB02
1923x1t_J_DC193_DT194BB2BB08900.36 BB08
1933x1t_J_DT194_DC195BBBBB00190.53 BB00
1943x1t_J_DC195_DC196B12BB04860.17 BB04
1953x1t_J_DC196_DA197BBBBB00620.20 BB00
1963x1t_J_DA197_DT198BBwBB02280.34 BB02
1973x1t_J_DT198_DC199NANNANT00.41 BB10
1983x1t_J_DC199_DA200NANNANT00.32 BB15
1993x1t_J_DA200_DA201miBBB10640.19 BB10
2003x1t_J_DA201_DA202B12BB04370.17 BB04
2013x1t_J_DA202_DA203BBBBB00780.13 BB00
2023x1t_J_DA203_DG204B12BB04730.29 BB04
2033x1t_J_DG204_DG205BB2BB07630.23 BB07
2043x1t_J_DG205_DC206NANNANT00.34 BB02
2053x1t_J_DC206_DA207B12BB04140.29 BB04
2063x1t_J_DA207_DT208miBBB15580.15 BB15
2073x1t_J_DT208_DG209BBBBB00240.19 BB00
2083x1t_J_DG209_DT210miBBB15480.30 BB15
2093x1t_J_DT210_DT211miBBB15650.24 BB15
2103x1t_J_DT211_DC212BBBBB00750.20 BB00
2113x1t_J_DC212_DA213BB2BB07480.23 BB07
2123x1t_J_DA213_DG214BB2BB07770.21 BB07
2133x1t_J_DG214_DC215B12BB04400.44 BB04
2143x1t_J_DC215_DT216BB2BB07750.21 BB07
2153x1t_J_DT216_DG217BBBBB00400.38 BB00
2163x1t_J_DG217_DA218BBBBB00720.23 BB00
2173x1t_J_DA218_DA219BBBBB00240.26 BB00
2183x1t_J_DA219_DT220miBBB15550.18 BB15
2193x1t_J_DT220_DT221BBBBB00220.15 BB00
2203x1t_J_DT221_DC222BBBBB00630.18 BB00
2213x1t_J_DC222_DA223BB2BB07520.15 BB07
2223x1t_J_DA223_DG224B12BB04580.27 BB04
2233x1t_J_DG224_DC225BB2BB07310.34 BB07
2243x1t_J_DC225_DT226BB2BB07710.21 BB07
2253x1t_J_DT226_DG227B12BB04600.45 BB04
2263x1t_J_DG227_DA228B12BB04740.27 BB04
2273x1t_J_DA228_DA229BBBBB00810.22 BB00
2283x1t_J_DA229_DC230miBBB15600.20 BB15
2293x1t_J_DC230_DA231B12BB04940.16 BB04
2303x1t_J_DA231_DT232BBwBB02530.25 BB02
2313x1t_J_DT232_DG233BBBBB00550.27 BB00
2323x1t_J_DG233_DC234B12BB04740.23 BB04
2333x1t_J_DC234_DC235BBBBB00530.40 BB00
2343x1t_J_DC235_DT236BB2BB07630.23 BB07
2353x1t_J_DT236_DT237BBBBB00630.32 BB00
2363x1t_J_DT237_DT238miBBB15740.22 BB15
2373x1t_J_DT238_DT239NANNANT00.35 BB15
2383x1t_J_DT239_DG240NANNANT00.37 BB10
2393x1t_J_DG240_DA241miBBB13340.44 BB13
2403x1t_J_DA241_DT242NANNANT00.54 BB10
2413x1t_J_DT242_DG243BBBBB00570.30 BB00
2423x1t_J_DG243_DG244BBBBB00910.16 BB00
2433x1t_J_DG244_DA245B12BB04540.36 BB04
2443x1t_J_DA245_DG246BB2BB07700.27 BB07
2453x1t_J_DG246_DC247NANNANT00.41 BB05
2463x1t_J_DC247_DA248BBwBB11300.64 BB11
2473x1t_J_DA248_DG249miBBB15610.42 BB15
2483x1t_J_DG249_DT250BBwBB02410.32 BB02
2493x1t_J_DT250_DT251BBwBB02360.40 BB02
2503x1t_J_DT251_DT252NANNANT00.59 BB02
2513x1t_J_DT252_DC253miBBB13360.36 BB13
2523x1t_J_DC253_DC254NANNANT00.66 BB11
2533x1t_J_DC254_DA255BB2BB07670.34 BB07
2543x1t_J_DA255_DA256BBBBB00620.34 BB00
2553x1t_J_DA256_DA257BBBBB00690.29 BB00
2563x1t_J_DA257_DT258miBBB15550.20 BB15
2573x1t_J_DT258_DA259BBBBB00690.30 BB00
2583x1t_J_DA259_DC260NANNANT00.43 BB05
2593x1t_J_DC260_DA261BBBBB00420.55 BB00
2603x1t_J_DA261_DC262BBwBB02290.42 BB02
2613x1t_J_DC262_DT263BBBBB00240.38 BB00
2623x1t_J_DT263_DT264BBwBB03440.51 BB03
2633x1t_J_DT264_DT265BBBBB00480.28 BB00
2643x1t_J_DT265_DT266NANNANT00.37 BB13
2653x1t_J_DT266_DG267NANNANT00.57 BB04
2663x1t_J_DG267_DG268BBwBB02470.48 BB02
2673x1t_J_DG268_DT269BBBBB00180.45 BB00
2683x1t_J_DT269_DA270B12BB04490.33 BB04
2693x1t_J_DA270_DG271miBBB12420.45 BB12
2703x1t_J_DG271_DA272BBwBB03490.37 BB03
2713x1t_J_DA272_DA273BBBBB00870.22 BB00
2723x1t_J_DA273_DT274NANNANT00.25 BB11
2733x1t_J_DT274_DC275BBwBB02300.41 BB02
2743x1t_J_DC275_DT276BBwBB02150.42 BB02
2753x1t_J_DT276_DG277NANNANT00.58 BB08
2763x1t_J_DG277_DC278BBBBB00580.32 BB00
2773x1t_J_DC278_DA279BB2BB07340.20 BB07
2783x1t_J_DA279_DG280BBwBB02490.30 BB02
2793x1t_J_DG280_DG281NANNANT00.40 BB10
2803x1t_J_DG281_DT282BBwBB02830.21 BB02
2813x1t_J_DT282_DG283BBBBB00790.34 BB00
2823x1t_J_DG283_DG284BBBBB00370.48 BB00
2833x1t_J_DG284_DA285BBBBB00650.38 BB00
2843x1t_J_DA285_DT286miBBB15450.21 BB15
2853x1t_J_DT286_DA287BBBBB01580.31 BB01
2863x1t_J_DA287_DT288miBBB15660.23 BB15
2873x1t_J_DT288_DT289BBBBB00850.14 BB00
2883x1t_J_DT289_DG290BBBBB00800.22 BB00
2893x1t_J_DG290_DA291B12BB04930.17 BB04
2903x1t_J_DA291_DT292BBwBB02130.49 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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