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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of Human Nucleosome Core Particle lacking H3.1 N-terminal region

Results of the assignment of 289 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013w98_I_DA1_DT2NANNANT00.39 BB03
0023w98_I_DT2_DC3BBwBB02170.59 BB02
0033w98_I_DC3_DA4BB2BB08600.47 BB08
0043w98_I_DA4_DA5NANNANT00.56 BB02
0053w98_I_DA5_DT6BBwBB02390.28 BB02
0063w98_I_DT6_DA7BBBBB00380.37 BB00
0073w98_I_DA7_DT8BBBBB00510.22 BB00
0083w98_I_DT8_DC9BBwBB02450.26 BB02
0093w98_I_DC9_DC10BBwBB02390.38 BB02
0103w98_I_DC10_DA11BBBBB00510.38 BB00
0113w98_I_DA11_DC12BBBBB00670.23 BB00
0123w98_I_DC12_DC13BBwBB02420.30 BB02
0133w98_I_DC13_DT14BBBBB00380.39 BB00
0143w98_I_DT14_DG15B12BB04180.59 BB04
0153w98_I_DG15_DC16BBBBB00540.24 BB00
0163w98_I_DC16_DA17BB2BB07670.34 BB07
0173w98_I_DA17_DG18BBBBB00370.26 BB00
0183w98_I_DG18_DA19miBBB13490.43 BB13
0193w98_I_DA19_DT20NANNANT00.48 BB15
0203w98_I_DT20_DT21BBwBB02420.30 BB02
0213w98_I_DT21_DC22BBBBB00410.29 BB00
0223w98_I_DC22_DT23BBwBB02820.17 BB02
0233w98_I_DT23_DA24BBwBB02740.34 BB02
0243w98_I_DA24_DC25miBBB13580.38 BB13
0253w98_I_DC25_DC26BBBBB00310.44 BB00
0263w98_I_DC26_DA27BB2BB07270.28 BB07
0273w98_I_DA27_DA28BBBBB00260.22 BB00
0283w98_I_DA28_DA29NANNANT00.44 BB08
0293w98_I_DA29_DA30BBBBB00570.34 BB00
0303w98_I_DA30_DG31BBBBB00600.18 BB00
0313w98_I_DG31_DT32BBwBB02690.17 BB02
0323w98_I_DT32_DG33BBBBB00600.21 BB00
0333w98_I_DG33_DT34miBBB13770.17 BB13
0343w98_I_DT34_DA35BBBBB00200.38 BB00
0353w98_I_DA35_DT36BBwBB03370.52 BB03
0363w98_I_DT36_DT37NANNANT00.59 BB02
0373w98_I_DT37_DT38BBwBB02240.47 BB02
0383w98_I_DT38_DG39BBBBB00270.52 BB00
0393w98_I_DG39_DG40NANNANT00.79 BB02
0403w98_I_DG40_DA41NANNANT00.67 BB02
0413w98_I_DA41_DA42NANNANT00.50 BB03
0423w98_I_DA42_DA43BBwBB02280.40 BB02
0433w98_I_DA43_DC44BBwBB02570.27 BB02
0443w98_I_DC44_DT45miBBB12520.36 BB12
0453w98_I_DT45_DG46NANNANT00.80 BB11
0463w98_I_DG46_DC47BBwBB02300.38 BB02
0473w98_I_DC47_DT48NANNANT00.62 BB08
0483w98_I_DT48_DC49BBwBB02330.33 BB02
0493w98_I_DC49_DC50BBwBB03480.48 BB03
0503w98_I_DC50_DA51BBwBB02410.50 BB02
0513w98_I_DA51_DT52NANNANT00.74 BB02
0523w98_I_DT52_DC53NANNANT00.62 BB02
0533w98_I_DC53_DA54BBwBB02340.23 BB02
0543w98_I_DA54_DA55miBBB12590.48 BB12
0553w98_I_DA55_DA56NANNANT00.62 BB03
0563w98_I_DA56_DA57BBBBB00530.32 BB00
0573w98_I_DA57_DG58miBBB12210.66 BB12
0583w98_I_DG58_DG59BBBBB00350.48 BB00
0593w98_I_DG59_DC60BBBBB00600.37 BB00
0603w98_I_DC60_DA61BBBBB00690.28 BB00
0613w98_I_DA61_DT62BBwBB02660.21 BB02
0623w98_I_DT62_DG63B12BB04500.35 BB04
0633w98_I_DG63_DT64BBwBB02230.35 BB02
0643w98_I_DT64_DT65BBwBB02670.29 BB02
0653w98_I_DT65_DC66BBBBB00430.26 BB00
0663w98_I_DC66_DA67BB2BB07440.28 BB07
0673w98_I_DA67_DG68BBBBB00330.38 BB00
0683w98_I_DG68_DC69NANNANT01.65 ZZ02
0693w98_I_DC69_DT70BBBBB00650.29 BB00
0703w98_I_DT70_DG71BBwBB02700.23 BB02
0713w98_I_DG71_DA72BBBBB00510.29 BB00
0723w98_I_DA72_DA73BBBBB00510.20 BB00
0733w98_I_DA73_DT74BBwBB02320.34 BB02
0743w98_I_DT74_DT75BBwBB02550.21 BB02
0753w98_I_DT75_DC76BBBBB00470.31 BB00
0763w98_I_DC76_DA77BB2BB07410.27 BB07
0773w98_I_DA77_DG78BBBBB00320.29 BB00
0783w98_I_DG78_DC79BB2BB07550.29 BB07
0793w98_I_DC79_DT80BBBBB00660.21 BB00
0803w98_I_DT80_DG81B12BB04640.23 BB04
0813w98_I_DG81_DA82BBBBB00670.28 BB00
0823w98_I_DA82_DA83BBwBB02580.27 BB02
0833w98_I_DA83_DC84BBwBB02820.24 BB02
0843w98_I_DC84_DA85BBBBB00690.24 BB00
0853w98_I_DA85_DT86BBwBB02660.19 BB02
0863w98_I_DT86_DG87BBBBB00330.28 BB00
0873w98_I_DG87_DC88BB2BB07150.43 BB07
0883w98_I_DC88_DC89BBBBB00300.21 BB00
0893w98_I_DC89_DT90BB2BB07560.26 BB07
0903w98_I_DT90_DT91BBwBB02790.17 BB02
0913w98_I_DT91_DT92BBwBB02580.33 BB02
0923w98_I_DT92_DT93BBwBB02560.28 BB02
0933w98_I_DT93_DG94BBwBB02410.23 BB02
0943w98_I_DG94_DA95BBBBB00320.39 BB00
0953w98_I_DA95_DT96BBwBB02700.24 BB02
0963w98_I_DT96_DG97BBBBB00680.28 BB00
0973w98_I_DG97_DG98BBBBB00450.18 BB00
0983w98_I_DG98_DA99BB2BB07640.34 BB07
0993w98_I_DA99_DG100BBBBB00320.35 BB00
1003w98_I_DG100_DC101BB2BB08570.49 BB08
1013w98_I_DC101_DA102BBwBB02370.65 BB02
1023w98_I_DA102_DG103B12BB04420.24 BB04
1033w98_I_DG103_DT104BBwBB02860.15 BB02
1043w98_I_DT104_DT105BBwBB02810.24 BB02
1053w98_I_DT105_DT106BBBBB00190.35 BB00
1063w98_I_DT106_DC107BBwBB02400.24 BB02
1073w98_I_DC107_DC108BB2BB08730.47 BB08
1083w98_I_DC108_DA109BBBBB00360.49 BB00
1093w98_I_DA109_DA110BBBBB00520.30 BB00
1103w98_I_DA110_DA111BBBBB00620.33 BB00
1113w98_I_DA111_DT112BBBBB00670.31 BB00
1123w98_I_DT112_DA113BBwBB02400.28 BB02
1133w98_I_DA113_DC114miBBB13780.28 BB13
1143w98_I_DC114_DA115BBBBB00220.53 BB00
1153w98_I_DA115_DC116NANNANT00.40 BB02
1163w98_I_DC116_DT117BBBBB00710.22 BB00
1173w98_I_DT117_DT118BBwBB02360.31 BB02
1183w98_I_DT118_DT119BBBBB00630.29 BB00
1193w98_I_DT119_DT120BBBBB00430.45 BB00
1203w98_I_DT120_DG121BBBBB00480.37 BB00
1213w98_I_DG121_DG122B12BB04630.23 BB04
1223w98_I_DG122_DT123BBwBB02700.32 BB02
1233w98_I_DT123_DA124BBBBB00560.33 BB00
1243w98_I_DA124_DG125BBwBB11590.33 BB11
1253w98_I_DG125_DA126BBBBB00110.54 BB00
1263w98_I_DA126_DA127BBBBB00650.32 BB00
1273w98_I_DA127_DT128miBBB13760.22 BB13
1283w98_I_DT128_DC129BBwBB02180.45 BB02
1293w98_I_DC129_DT130BB2BB07350.37 BB07
1303w98_I_DT130_DG131BBwBB02390.44 BB02
1313w98_I_DG131_DC132BBBBB00310.45 BB00
1323w98_I_DC132_DA133NANNANT00.50 BB02
1333w98_I_DA133_DG134NANNANT00.57 BB02
1343w98_I_DG134_DG135NANNANT00.50 BB02
1353w98_I_DG135_DT136miBBB13650.29 BB13
1363w98_I_DT136_DG137BBwBB16650.33 BB16
1373w98_I_DG137_DG138BBBBB00310.41 BB00
1383w98_I_DG138_DA139BBwBB11570.53 BB11
1393w98_I_DA139_DT140NANNANT00.56 BB02
1403w98_I_DT140_DA141BBBBB00640.23 BB00
1413w98_I_DA141_DT142BBwBB02530.22 BB02
1423w98_I_DT142_DT143BBBBB00370.27 BB00
1433w98_I_DT143_DG144BBBBB00290.41 BB00
1443w98_I_DG144_DA145BBBBB00150.29 BB00
1453w98_J_DA147_DT148BBwBB03450.45 BB03
1463w98_J_DT148_DC149NANNANT00.48 BB02
1473w98_J_DC149_DA150NANNANT00.37 BB02
1483w98_J_DA150_DA151BBBBB00170.40 BB00
1493w98_J_DA151_DT152miBBB13730.34 BB13
1503w98_J_DT152_DA153NANNANT00.64 BB02
1513w98_J_DA153_DT154BBwBB02630.34 BB02
1523w98_J_DT154_DC155miBBB13490.43 BB13
1533w98_J_DC155_DC156NANNANT00.51 BB02
1543w98_J_DC156_DA157B12BB05440.44 BB05
1553w98_J_DA157_DC158BBBBB00580.26 BB00
1563w98_J_DC158_DC159BBwBB02530.28 BB02
1573w98_J_DC159_DT160BBBBB00380.24 BB00
1583w98_J_DT160_DG161B12BB04470.32 BB04
1593w98_J_DG161_DC162NANNANT00.56 BB02
1603w98_J_DC162_DA163NANNANT00.43 BB04
1613w98_J_DA163_DG164B12BB04210.38 BB04
1623w98_J_DG164_DA165BBwBB02540.33 BB02
1633w98_J_DA165_DT166BBwBB02210.30 BB02
1643w98_J_DT166_DT167BBBBB00440.37 BB00
1653w98_J_DT167_DC168BBBBB00610.26 BB00
1663w98_J_DC168_DT169BBwBB02830.17 BB02
1673w98_J_DT169_DA170BBBBB00310.38 BB00
1683w98_J_DA170_DC171BBwBB02480.44 BB02
1693w98_J_DC171_DC172NANNANT00.35 BB03
1703w98_J_DC172_DA173BBwBB11550.55 BB11
1713w98_J_DA173_DA174BBBBB00480.34 BB00
1723w98_J_DA174_DA175BBwBB02690.34 BB02
1733w98_J_DA175_DA176BBBBB00610.27 BB00
1743w98_J_DA176_DG177BBBBB00720.21 BB00
1753w98_J_DG177_DT178BBwBB02520.25 BB02
1763w98_J_DT178_DG179BBBBB00700.19 BB00
1773w98_J_DG179_DT180BBwBB02860.12 BB02
1783w98_J_DT180_DA181BBBBB00520.24 BB00
1793w98_J_DA181_DT182NANNANT00.52 BB02
1803w98_J_DT182_DT183BBwBB03750.21 BB03
1813w98_J_DT183_DT184BBwBB02300.42 BB02
1823w98_J_DT184_DG185BB2BB07500.24 BB07
1833w98_J_DG185_DG186BBBBB00360.30 BB00
1843w98_J_DG186_DA187BB2BB07230.41 BB07
1853w98_J_DA187_DA188BBBBB00680.22 BB00
1863w98_J_DA188_DA189BBBBB00440.26 BB00
1873w98_J_DA189_DC190miBBB13800.20 BB13
1883w98_J_DC190_DT191BBBBB00190.62 BB00
1893w98_J_DT191_DG192BB2BB07670.29 BB07
1903w98_J_DG192_DC193NANNANT00.47 BB02
1913w98_J_DC193_DT194NANNANT00.59 BB08
1923w98_J_DT194_DC195NANNANT00.54 BB02
1933w98_J_DC195_DC196BBBBB00350.33 BB00
1943w98_J_DC196_DA197BBBBB00720.23 BB00
1953w98_J_DA197_DT198miBBB15730.20 BB15
1963w98_J_DT198_DC199BBBBB00400.33 BB00
1973w98_J_DC199_DA200B12BB04320.29 BB04
1983w98_J_DA200_DA201BBwBB02260.32 BB02
1993w98_J_DA201_DA202BBBBB00610.29 BB00
2003w98_J_DA202_DA203BBBBB00400.26 BB00
2013w98_J_DA203_DG204B12BB04260.44 BB04
2023w98_J_DG204_DG205BB2BB07660.22 BB07
2033w98_J_DG205_DC206BBwBB02490.30 BB02
2043w98_J_DC206_DA207B12BB04220.29 BB04
2053w98_J_DA207_DT208BBwBB02710.23 BB02
2063w98_J_DT208_DG209BBwBB02380.42 BB02
2073w98_J_DG209_DT210BBBBB00520.29 BB00
2083w98_J_DT210_DT211BBwBB02470.30 BB02
2093w98_J_DT211_DC212BBwBB02710.32 BB02
2103w98_J_DC212_DA213BBBBB00430.26 BB00
2113w98_J_DA213_DG214BB2BB07600.32 BB07
2123w98_J_DG214_DC215BBBBB00280.23 BB00
2133w98_J_DC215_DT216BB2BB07130.36 BB07
2143w98_J_DT216_DG217BBBBB00580.31 BB00
2153w98_J_DG217_DA218BBBBB00580.30 BB00
2163w98_J_DA218_DA219BBwBB02490.31 BB02
2173w98_J_DA219_DT220BBwBB02730.18 BB02
2183w98_J_DT220_DT221BBBBB00610.22 BB00
2193w98_J_DT221_DC222BBBBB00510.22 BB00
2203w98_J_DC222_DA223NANNANT00.33 BB10
2213w98_J_DA223_DG224NANNANT00.40 BB07
2223w98_J_DG224_DC225BBBBB00330.17 BB00
2233w98_J_DC225_DT226BB2BB07650.24 BB07
2243w98_J_DT226_DG227BBBBB00530.27 BB00
2253w98_J_DG227_DA228B12BB04550.32 BB04
2263w98_J_DA228_DA229BBBBB00630.17 BB00
2273w98_J_DA229_DC230BBwBB02650.17 BB02
2283w98_J_DC230_DA231B12BB04600.31 BB04
2293w98_J_DA231_DT232NANNANT00.33 BB02
2303w98_J_DT232_DG233BBBBB00700.21 BB00
2313w98_J_DG233_DC234BBBBB00510.35 BB00
2323w98_J_DC234_DC235B12BB04300.32 BB04
2333w98_J_DC235_DT236NANNANT00.32 BB07
2343w98_J_DT236_DT237BBBBB00430.43 BB00
2353w98_J_DT237_DT238BBwBB02640.17 BB02
2363w98_J_DT238_DT239NANNANT00.52 BB15
2373w98_J_DT239_DG240NANNANT00.81 BB07
2383w98_J_DG240_DA241miBBB12500.36 BB12
2393w98_J_DA241_DT242BBwBB02380.57 BB02
2403w98_J_DT242_DG243BBwBB02670.26 BB02
2413w98_J_DG243_DG244BBBBB00550.28 BB00
2423w98_J_DG244_DA245BBBBB00470.21 BB00
2433w98_J_DA245_DG246BB2BB07690.30 BB07
2443w98_J_DG246_DC247NANNANT00.36 BB02
2453w98_J_DC247_DA248NANNANT00.50 BB08
2463w98_J_DA248_DG249BBwBB02440.48 BB02
2473w98_J_DG249_DT250BBwBB02310.35 BB02
2483w98_J_DT250_DT251BBwBB02490.28 BB02
2493w98_J_DT251_DT252NANNANT00.61 BB02
2503w98_J_DT252_DC253miBBB12740.32 BB12
2513w98_J_DC253_DC254NANNANT00.60 BB03
2523w98_J_DC254_DA255BB2BB07420.45 BB07
2533w98_J_DA255_DA256BBBBB00180.42 BB00
2543w98_J_DA256_DA257BBBBB00630.29 BB00
2553w98_J_DA257_DT258BBwBB02610.29 BB02
2563w98_J_DT258_DA259BBBBB00470.39 BB00
2573w98_J_DA259_DC260NANNANT00.44 BB02
2583w98_J_DC260_DA261BBBBB00220.48 BB00
2593w98_J_DA261_DC262BBwBB02540.29 BB02
2603w98_J_DC262_DT263NANNANT00.38 BB02
2613w98_J_DT263_DT264miBBB13820.24 BB13
2623w98_J_DT264_DT265NANNANT00.47 BB02
2633w98_J_DT265_DT266miBBB13780.26 BB13
2643w98_J_DT266_DG267BBBBB00140.48 BB00
2653w98_J_DG267_DG268BBwBB02690.32 BB02
2663w98_J_DG268_DT269BBBBB00520.25 BB00
2673w98_J_DT269_DA270BBBBB00530.34 BB00
2683w98_J_DA270_DG271miBBB12300.59 BB12
2693w98_J_DG271_DA272BBwBB03330.44 BB03
2703w98_J_DA272_DA273BBBBB00130.36 BB00
2713w98_J_DA273_DT274BBwBB02710.17 BB02
2723w98_J_DT274_DC275BBwBB02470.36 BB02
2733w98_J_DC275_DT276BBwBB02380.53 BB02
2743w98_J_DT276_DG277NANNANT00.57 BB08
2753w98_J_DG277_DC278miBBB15540.49 BB15
2763w98_J_DC278_DA279BB2BB07590.26 BB07
2773w98_J_DA279_DG280BBBBB00350.28 BB00
2783w98_J_DG280_DG281NANNANT00.39 BB02
2793w98_J_DG281_DT282BBwBB02610.32 BB02
2803w98_J_DT282_DG283BBwBB02580.26 BB02
2813w98_J_DG283_DG284NANNANT00.38 BB11
2823w98_J_DG284_DA285NANNANT00.42 BB17
2833w98_J_DA285_DT286NANNANT00.60 BB02
2843w98_J_DT286_DA287miBBB13640.27 BB13
2853w98_J_DA287_DT288BBwBB16210.54 BB16
2863w98_J_DT288_DT289BBwBB02360.29 BB02
2873w98_J_DT289_DG290BBBBB00590.30 BB00
2883w98_J_DG290_DA291B12BB04520.27 BB04
2893w98_J_DA291_DT292BBwBB02740.22 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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