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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of Human Nucleosome Core Particle lacking H2A N-terminal region

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013w96_I_DA1_DT2NANNANT00.43 BB03
0023w96_I_DT2_DC3NANNANT00.55 BB02
0033w96_I_DC3_DA4BBwBB11620.50 BB11
0043w96_I_DA4_DA5NANNANT00.50 BB10
0053w96_I_DA5_DT6BBwBB02380.29 BB02
0063w96_I_DT6_DA7BBBBB00610.32 BB00
0073w96_I_DA7_DT8BBBBB00680.25 BB00
0083w96_I_DT8_DC9BBwBB02750.23 BB02
0093w96_I_DC9_DC10BBwBB02540.52 BB02
0103w96_I_DC10_DA11BBBBB00540.33 BB00
0113w96_I_DA11_DC12BBBBB00640.25 BB00
0123w96_I_DC12_DC13BBwBB02310.26 BB02
0133w96_I_DC13_DT14BBBBB00430.33 BB00
0143w96_I_DT14_DG15NANNANT00.55 BB04
0153w96_I_DG15_DC16BBBBB00230.32 BB00
0163w96_I_DC16_DA17BB2BB07560.38 BB07
0173w96_I_DA17_DG18BBBBB00190.42 BB00
0183w96_I_DG18_DA19miBBB13410.38 BB13
0193w96_I_DA19_DT20BBwBB02330.43 BB02
0203w96_I_DT20_DT21BBwBB02510.25 BB02
0213w96_I_DT21_DC22BBBBB00540.27 BB00
0223w96_I_DC22_DT23BBwBB02610.23 BB02
0233w96_I_DT23_DA24BBwBB02570.32 BB02
0243w96_I_DA24_DC25BBwBB03700.35 BB03
0253w96_I_DC25_DC26BBBBB00470.31 BB00
0263w96_I_DC26_DA27BB2BB07800.23 BB07
0273w96_I_DA27_DA28BBBBB00140.33 BB00
0283w96_I_DA28_DA29BB2BB08660.40 BB08
0293w96_I_DA29_DA30BBBBB00520.31 BB00
0303w96_I_DA30_DG31BBBBB00640.20 BB00
0313w96_I_DG31_DT32BBwBB02770.20 BB02
0323w96_I_DT32_DG33BBBBB00690.18 BB00
0333w96_I_DG33_DT34miBBB13780.26 BB13
0343w96_I_DT34_DA35BBwBB16360.47 BB16
0353w96_I_DA35_DT36miBBB13490.41 BB13
0363w96_I_DT36_DT37NANNANT00.64 BB02
0373w96_I_DT37_DT38NANNANT00.39 BB15
0383w96_I_DT38_DG39BBBBB00240.38 BB00
0393w96_I_DG39_DG40NANNANT00.79 BB12
0403w96_I_DG40_DA41NANNANT00.69 BB02
0413w96_I_DA41_DA42BBwBB03420.51 BB03
0423w96_I_DA42_DA43BBwBB02240.42 BB02
0433w96_I_DA43_DC44BBwBB02290.32 BB02
0443w96_I_DC44_DT45miBBB12280.49 BB12
0453w96_I_DT45_DG46NANNANT00.71 BB03
0463w96_I_DG46_DC47NANNANT00.51 BB02
0473w96_I_DC47_DT48NANNANT00.82 BB05
0483w96_I_DT48_DC49NANNANT00.42 BB02
0493w96_I_DC49_DC50BBwBB03640.44 BB03
0503w96_I_DC50_DA51BBwBB02590.42 BB02
0513w96_I_DA51_DT52NANNANT00.65 BB02
0523w96_I_DT52_DC53NANNANT00.65 BB02
0533w96_I_DC53_DA54BBwBB02240.27 BB02
0543w96_I_DA54_DA55miBBB12750.40 BB12
0553w96_I_DA55_DA56NANNANT00.78 BB13
0563w96_I_DA56_DA57BBBBB00650.27 BB00
0573w96_I_DA57_DG58miBBB12140.74 BB12
0583w96_I_DG58_DG59BBBBB00240.52 BB00
0593w96_I_DG59_DC60BBBBB00530.40 BB00
0603w96_I_DC60_DA61BBBBB00630.29 BB00
0613w96_I_DA61_DT62BBwBB02600.21 BB02
0623w96_I_DT62_DG63B12BB04540.38 BB04
0633w96_I_DG63_DT64BBwBB02300.39 BB02
0643w96_I_DT64_DT65BBwBB02610.35 BB02
0653w96_I_DT65_DC66BBBBB00340.26 BB00
0663w96_I_DC66_DA67BB2BB07220.31 BB07
0673w96_I_DA67_DG68BBBBB00320.28 BB00
0683w96_I_DG68_DC69BB2BB07370.27 BB07
0693w96_I_DC69_DT70BBBBB00630.31 BB00
0703w96_I_DT70_DG71miBBB15440.29 BB15
0713w96_I_DG71_DA72BBBBB00650.31 BB00
0723w96_I_DA72_DA73NANNANT00.30 BB15
0733w96_I_DA73_DT74BBwBB02550.39 BB02
0743w96_I_DT74_DT75BBwBB02210.43 BB02
0753w96_I_DT75_DC76BBBBB00320.27 BB00
0763w96_I_DC76_DA77BB2BB07600.17 BB07
0773w96_I_DA77_DG78NANNANT00.43 BB02
0783w96_I_DG78_DC79BB2BB07360.30 BB07
0793w96_I_DC79_DT80BBBBB00490.28 BB00
0803w96_I_DT80_DG81B12BB04580.23 BB04
0813w96_I_DG81_DA82BBBBB00650.21 BB00
0823w96_I_DA82_DA83BBwBB02510.24 BB02
0833w96_I_DA83_DC84miBBB15450.28 BB15
0843w96_I_DC84_DA85BBBBB00750.27 BB00
0853w96_I_DA85_DT86BBwBB02320.29 BB02
0863w96_I_DT86_DG87BBBBB00270.34 BB00
0873w96_I_DG87_DC88BB2BB07520.38 BB07
0883w96_I_DC88_DC89BBBBB00290.23 BB00
0893w96_I_DC89_DT90BB2BB07550.22 BB07
0903w96_I_DT90_DT91BBwBB02760.18 BB02
0913w96_I_DT91_DT92BBwBB02330.34 BB02
0923w96_I_DT92_DT93BBwBB02440.29 BB02
0933w96_I_DT93_DG94BBwBB02400.27 BB02
0943w96_I_DG94_DA95BBBBB00260.39 BB00
0953w96_I_DA95_DT96BBwBB02440.29 BB02
0963w96_I_DT96_DG97BBBBB00720.21 BB00
0973w96_I_DG97_DG98BBBBB00340.26 BB00
0983w96_I_DG98_DA99BB2BB07330.36 BB07
0993w96_I_DA99_DG100BBBBB00140.39 BB00
1003w96_I_DG100_DC101NANNANT00.51 BB08
1013w96_I_DC101_DA102BBwBB02460.56 BB02
1023w96_I_DA102_DG103BBBBB00560.31 BB00
1033w96_I_DG103_DT104BBwBB02720.21 BB02
1043w96_I_DT104_DT105BBwBB02780.21 BB02
1053w96_I_DT105_DT106miBBB15540.30 BB15
1063w96_I_DT106_DC107BBwBB02650.21 BB02
1073w96_I_DC107_DC108BB2BB08620.50 BB08
1083w96_I_DC108_DA109BBBBB00670.40 BB00
1093w96_I_DA109_DA110BBBBB00560.28 BB00
1103w96_I_DA110_DA111B12BB04650.21 BB04
1113w96_I_DA111_DT112BBBBB00560.37 BB00
1123w96_I_DT112_DA113BBwBB02540.25 BB02
1133w96_I_DA113_DC114miBBB13670.29 BB13
1143w96_I_DC114_DA115BBBBB00400.52 BB00
1153w96_I_DA115_DC116BBwBB02310.27 BB02
1163w96_I_DC116_DT117BBBBB00670.25 BB00
1173w96_I_DT117_DT118BBwBB02160.34 BB02
1183w96_I_DT118_DT119BBBBB00490.38 BB00
1193w96_I_DT119_DT120BBBBB00240.42 BB00
1203w96_I_DT120_DG121BBBBB00570.26 BB00
1213w96_I_DG121_DG122B12BB04610.19 BB04
1223w96_I_DG122_DT123BBwBB02710.31 BB02
1233w96_I_DT123_DA124BBBBB00530.32 BB00
1243w96_I_DA124_DG125BBwBB11700.28 BB11
1253w96_I_DG125_DA126BBBBB0080.48 BB00
1263w96_I_DA126_DA127BBBBB00380.36 BB00
1273w96_I_DA127_DT128miBBB13620.30 BB13
1283w96_I_DT128_DC129BBwBB02430.44 BB02
1293w96_I_DC129_DT130B12BB04500.32 BB04
1303w96_I_DT130_DG131BBwBB02370.37 BB02
1313w96_I_DG131_DC132BBBBB00320.39 BB00
1323w96_I_DC132_DA133BBBBB00310.36 BB00
1333w96_I_DA133_DG134NANNANT00.51 BB02
1343w96_I_DG134_DG135NANNANT00.43 BB02
1353w96_I_DG135_DT136miBBB13760.24 BB13
1363w96_I_DT136_DG137BBBBB00390.50 BB00
1373w96_I_DG137_DG138BBBBB00240.39 BB00
1383w96_I_DG138_DA139BBwBB11620.47 BB11
1393w96_I_DA139_DT140NANNANT00.43 BB02
1403w96_I_DT140_DA141BBBBB00730.22 BB00
1413w96_I_DA141_DT142BBwBB02460.24 BB02
1423w96_I_DT142_DT143BBBBB00480.24 BB00
1433w96_I_DT143_DG144BBBBB00360.38 BB00
1443w96_I_DG144_DA145BBBBB00200.30 BB00
1453w96_J_DT148_DC149NANNANT00.53 BB02
1463w96_J_DC149_DA150BBwBB02250.24 BB02
1473w96_J_DA150_DA151BBBBB00430.31 BB00
1483w96_J_DA151_DT152miBBB12370.45 BB12
1493w96_J_DT152_DA153NANNANT00.88 BB02
1503w96_J_DA153_DT154BBwBB02660.28 BB02
1513w96_J_DT154_DC155miBBB13580.46 BB13
1523w96_J_DC155_DC156NANNANT00.49 BB02
1533w96_J_DC156_DA157BB2BB08770.26 BB08
1543w96_J_DA157_DC158BBBBB00320.37 BB00
1553w96_J_DC158_DC159BBwBB02680.24 BB02
1563w96_J_DC159_DT160BBBBB00440.31 BB00
1573w96_J_DT160_DG161BBBBB00360.43 BB00
1583w96_J_DG161_DC162NANNANT00.55 BB02
1593w96_J_DC162_DA163BBBBB00220.51 BB00
1603w96_J_DA163_DG164B12BB04350.36 BB04
1613w96_J_DG164_DA165BBwBB02240.38 BB02
1623w96_J_DA165_DT166BBwBB02280.30 BB02
1633w96_J_DT166_DT167BBBBB00570.30 BB00
1643w96_J_DT167_DC168BBBBB00630.22 BB00
1653w96_J_DC168_DT169BBwBB02690.23 BB02
1663w96_J_DT169_DA170BBBBB00490.34 BB00
1673w96_J_DA170_DC171BBwBB02540.31 BB02
1683w96_J_DC171_DC172NANNANT00.55 BB17
1693w96_J_DC172_DA173NANNANT00.37 BB11
1703w96_J_DA173_DA174BBBBB00260.42 BB00
1713w96_J_DA174_DA175NANNANT00.60 BB02
1723w96_J_DA175_DA176BBBBB00470.33 BB00
1733w96_J_DA176_DG177BBBBB00700.23 BB00
1743w96_J_DG177_DT178BBwBB02690.23 BB02
1753w96_J_DT178_DG179BBBBB00500.27 BB00
1763w96_J_DG179_DT180BBwBB02740.14 BB02
1773w96_J_DT180_DA181BBBBB00450.26 BB00
1783w96_J_DA181_DT182NANNANT00.64 BB02
1793w96_J_DT182_DT183BBwBB03820.21 BB03
1803w96_J_DT183_DT184BBwBB02760.22 BB02
1813w96_J_DT184_DG185B12BB04350.46 BB04
1823w96_J_DG185_DG186BBBBB00210.32 BB00
1833w96_J_DG186_DA187BB2BB07520.41 BB07
1843w96_J_DA187_DA188BBBBB00680.25 BB00
1853w96_J_DA188_DA189BBBBB00600.23 BB00
1863w96_J_DA189_DC190miBBB13680.19 BB13
1873w96_J_DC190_DT191BBBBB00120.68 BB00
1883w96_J_DT191_DG192BB2BB07470.29 BB07
1893w96_J_DG192_DC193BBwBB02210.32 BB02
1903w96_J_DC193_DT194NANNANT00.51 BB08
1913w96_J_DT194_DC195BBwBB02160.53 BB02
1923w96_J_DC195_DC196BBBBB00290.35 BB00
1933w96_J_DC196_DA197B12BB04640.17 BB04
1943w96_J_DA197_DT198NANNANT00.40 BB02
1953w96_J_DT198_DC199BBBBB00160.37 BB00
1963w96_J_DC199_DA200BBBBB00440.30 BB00
1973w96_J_DA200_DA201BBwBB02320.35 BB02
1983w96_J_DA201_DA202BBBBB00550.29 BB00
1993w96_J_DA202_DA203BBBBB00180.36 BB00
2003w96_J_DA203_DG204B12BB04160.38 BB04
2013w96_J_DG204_DG205BB2BB07230.23 BB07
2023w96_J_DG205_DC206BBwBB02420.32 BB02
2033w96_J_DC206_DA207B12BB04120.33 BB04
2043w96_J_DA207_DT208BBwBB02700.23 BB02
2053w96_J_DT208_DG209miBBB15500.34 BB15
2063w96_J_DG209_DT210BBBBB00680.32 BB00
2073w96_J_DT210_DT211BBwBB02470.36 BB02
2083w96_J_DT211_DC212BBwBB02300.37 BB02
2093w96_J_DC212_DA213BBBBB00390.20 BB00
2103w96_J_DA213_DG214BB2BB07530.34 BB07
2113w96_J_DG214_DC215BBBBB00470.20 BB00
2123w96_J_DC215_DT216BB2BB07400.34 BB07
2133w96_J_DT216_DG217BBBBB00550.34 BB00
2143w96_J_DG217_DA218BBBBB00450.32 BB00
2153w96_J_DA218_DA219NANNANT00.34 BB15
2163w96_J_DA219_DT220BBwBB02830.17 BB02
2173w96_J_DT220_DT221BBBBB00660.21 BB00
2183w96_J_DT221_DC222BBBBB00640.22 BB00
2193w96_J_DC222_DA223BBBBB00340.39 BB00
2203w96_J_DA223_DG224BB2BB07200.34 BB07
2213w96_J_DG224_DC225BBBBB00490.17 BB00
2223w96_J_DC225_DT226BB2BB07450.33 BB07
2233w96_J_DT226_DG227BBBBB00400.32 BB00
2243w96_J_DG227_DA228B12BB04380.31 BB04
2253w96_J_DA228_DA229BBBBB00720.18 BB00
2263w96_J_DA229_DC230BBwBB02690.16 BB02
2273w96_J_DC230_DA231B12BB04590.35 BB04
2283w96_J_DA231_DT232BBwBB02390.31 BB02
2293w96_J_DT232_DG233BBBBB00830.22 BB00
2303w96_J_DG233_DC234BBBBB00580.31 BB00
2313w96_J_DC234_DC235B12BB04550.17 BB04
2323w96_J_DC235_DT236NANNANT00.29 BB07
2333w96_J_DT236_DT237B12BB04310.31 BB04
2343w96_J_DT237_DT238BBwBB02720.24 BB02
2353w96_J_DT238_DT239NANNANT00.59 BB02
2363w96_J_DT239_DG240NANNANT00.81 BB07
2373w96_J_DG240_DA241miBBB12390.43 BB12
2383w96_J_DA241_DT242NANNANT00.65 BB02
2393w96_J_DT242_DG243BBwBB02310.20 BB02
2403w96_J_DG243_DG244BBBBB00380.36 BB00
2413w96_J_DG244_DA245BBBBB00380.31 BB00
2423w96_J_DA245_DG246BB2BB07500.37 BB07
2433w96_J_DG246_DC247BBwBB02320.36 BB02
2443w96_J_DC247_DA248NANNANT00.53 BB08
2453w96_J_DA248_DG249BBwBB02570.46 BB02
2463w96_J_DG249_DT250BBwBB02510.32 BB02
2473w96_J_DT250_DT251BBwBB02580.26 BB02
2483w96_J_DT251_DT252NANNANT00.68 BB02
2493w96_J_DT252_DC253miBBB12740.34 BB12
2503w96_J_DC253_DC254NANNANT00.57 BB03
2513w96_J_DC254_DA255BB2BB07500.43 BB07
2523w96_J_DA255_DA256BBBBB00320.42 BB00
2533w96_J_DA256_DA257BBBBB00680.25 BB00
2543w96_J_DA257_DT258BBwBB02460.31 BB02
2553w96_J_DT258_DA259BBBBB00490.33 BB00
2563w96_J_DA259_DC260NANNANT00.34 BB02
2573w96_J_DC260_DA261BBBBB00170.49 BB00
2583w96_J_DA261_DC262BBwBB02400.42 BB02
2593w96_J_DC262_DT263BBwBB02360.37 BB02
2603w96_J_DT263_DT264miBBB13750.27 BB13
2613w96_J_DT264_DT265BBwBB02170.47 BB02
2623w96_J_DT265_DT266miBBB13400.24 BB13
2633w96_J_DT266_DG267BBBBB00280.46 BB00
2643w96_J_DG267_DG268BBwBB02240.35 BB02
2653w96_J_DG268_DT269BBBBB00480.32 BB00
2663w96_J_DT269_DA270BBBBB00600.29 BB00
2673w96_J_DA270_DG271miBBB12260.51 BB12
2683w96_J_DG271_DA272BBwBB03470.40 BB03
2693w96_J_DA272_DA273BBBBB00610.27 BB00
2703w96_J_DA273_DT274BBwBB02600.19 BB02
2713w96_J_DT274_DC275BBwBB02450.36 BB02
2723w96_J_DC275_DT276BBwBB02410.47 BB02
2733w96_J_DT276_DG277NANNANT00.60 BB08
2743w96_J_DG277_DC278miBBB15390.55 BB15
2753w96_J_DC278_DA279BB2BB07490.33 BB07
2763w96_J_DA279_DG280NANNANT00.44 BB02
2773w96_J_DG280_DG281NANNANT00.40 BB02
2783w96_J_DG281_DT282BBwBB02760.25 BB02
2793w96_J_DT282_DG283BBwBB02470.32 BB02
2803w96_J_DG283_DG284BBwBB11680.33 BB11
2813w96_J_DG284_DA285BBBBB00170.44 BB00
2823w96_J_DA285_DT286NANNANT00.34 BB02
2833w96_J_DT286_DA287miBBB12390.40 BB12
2843w96_J_DA287_DT288BBwBB16490.49 BB16
2853w96_J_DT288_DT289BBwBB02560.22 BB02
2863w96_J_DT289_DG290BBBBB00510.31 BB00
2873w96_J_DG290_DA291B12BB04430.26 BB04
2883w96_J_DA291_DT292BBwBB02730.21 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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