Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3w6v_B_DC-3_DT-2 | NAN | NANT | 0 | 0.50 |
| 02 | 3w6v_B_DT-2_DG-1 | A-B | AB03 | 79 | 0.30 |
| 03 | 3w6v_B_DG-1_DT0 | BBB | BB00 | 69 | 0.34 |
| 04 | 3w6v_B_DT0_DG1 | miB | BB10 | 57 | 0.25 |
| 05 | 3w6v_B_DG1_DA2 | miB | BB10 | 63 | 0.41 |
| 06 | 3w6v_B_DA2_DA3 | BBB | BB01 | 51 | 0.21 |
| 07 | 3w6v_B_DA3_DC4 | BBB | BB00 | 57 | 0.27 |
| 08 | 3w6v_B_DC4_DC5 | NAN | NANT | 0 | 0.56 |
| 09 | 3w6v_B_DC5_DC6 | BB2 | BB07 | 36 | 0.27 |
| 10 | 3w6v_B_DC6_DG7 | miB | BB10 | 65 | 0.54 |
| 11 | 3w6v_B_DG7_DC8 | BBB | BB00 | 88 | 0.19 |
| 12 | 3w6v_B_DC8_DC9 | BBB | BB00 | 82 | 0.29 |
| 13 | 3w6v_B_DC9_DA10 | NAN | NANT | 0 | 0.47 |
| 14 | 3w6v_B_DA10_DA11 | BBB | BB01 | 69 | 0.18 |
| 15 | 3w6v_B_DA11_DC12 | miB | BB12 | 34 | 0.57 |
| 16 | 3w6v_C_DA-3_DG-2 | NAN | NANT | 0 | 0.76 |
| 17 | 3w6v_C_DG-2_DG-1 | AAA | AA00 | 86 | 0.33 |
| 18 | 3w6v_C_DG-1_DT0 | A-B | AB01 | 41 | 0.35 |
| 19 | 3w6v_C_DT0_DT1 | B-A | BA05 | 12 | 0.33 |
| 20 | 3w6v_C_DT1_DG2 | A-B | AB03 | 78 | 0.29 |
| 21 | 3w6v_C_DG2_DG3 | NAN | NANT | 0 | 0.39 |
| 22 | 3w6v_C_DG3_DC4 | BBw | BB17 | 53 | 0.21 |
| 23 | 3w6v_C_DC4_DG5 | BB2 | BB07 | 39 | 0.35 |
| 24 | 3w6v_C_DG5_DG6 | BBB | BB00 | 47 | 0.32 |
| 25 | 3w6v_C_DG6_DG7 | BB2 | BB07 | 35 | 0.45 |
| 26 | 3w6v_C_DG7_DT8 | BBB | BB01 | 63 | 0.19 |
| 27 | 3w6v_C_DT8_DT9 | B-A | BA08 | 55 | 0.44 |
| 28 | 3w6v_C_DT9_DC10 | A-B | AB01 | 27 | 0.42 |
| 29 | 3w6v_C_DC10_DA11 | BBB | BB00 | 86 | 0.16 |
| 30 | 3w6v_C_DA11_DC12 | BBB | BB00 | 17 | 0.35 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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