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Conformers: ABBIImiBZICOPNSYNN
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Both Zn Fingers of GATA1 Bound to Palindromic DNA Recognition Site, P21 Crystal Form

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013vd6_A_DT1_DT2NANNANT00.59 BA10
023vd6_A_DT2_DG3BBwBB16270.63 BB16
033vd6_A_DG3_DT4BBwBB02230.33 BB02
043vd6_A_DT4_DC5BBBBB00610.21 BB00
053vd6_A_DC5_DT6B12BB04900.20 BB04
063vd6_A_DT6_DT7BBBBB00770.30 BB00
073vd6_A_DT7_DA8BB2BB07800.35 BB07
083vd6_A_DA8_DT9BBBBB00790.23 BB00
093vd6_A_DT9_DC10B-ABA08330.34 BA08
103vd6_A_DC10_DA11A-BAB05350.25 AB05
113vd6_A_DA11_DG12BBBBB00660.17 BB00
123vd6_A_DG12_DA13BBBBB00800.27 BB00
133vd6_A_DA13_DT14BBBBB00900.21 BB00
143vd6_A_DT14_DG15BBBBB00850.23 BB00
153vd6_A_DG15_DG16BB2BB07850.32 BB07
163vd6_A_DG16_DA17BBBBB00940.09 BB00
173vd6_A_DA17_DC18B-ABA01730.20 BA01
183vd6_A_DC18_DT19A-BAB01670.33 AB01
193vd6_A_DT19_DC20BBBBB01870.16 BB01
203vd6_B_DA21_DA22NANNANT00.36 BB00
213vd6_B_DA22_DG23B-ABA08820.26 BA08
223vd6_B_DG23_DA24A-BAB01580.21 AB01
233vd6_B_DA24_DG25BBBBB00820.14 BB00
243vd6_B_DG25_DT26BBBBB00720.31 BB00
253vd6_B_DT26_DC27B-ABA05910.17 BA05
263vd6_B_DC27_DC28BBBBB00280.26 BB00
273vd6_B_DC28_DA29BB2BB07790.33 BB07
283vd6_B_DA29_DT30BBBBB00870.23 BB00
293vd6_B_DT30_DC31B-ABA08670.25 BA08
303vd6_B_DC31_DT32A-BAB01630.26 AB01
313vd6_B_DT32_DG33BBBBB00890.12 BB00
323vd6_B_DG33_DA34BBBBB00790.27 BB00
333vd6_B_DA34_DT35BBBBB00920.18 BB00
343vd6_B_DT35_DA36BBBBB00790.23 BB00
353vd6_B_DA36_DA37BB2BB07650.37 BB07
363vd6_B_DA37_DG38BBBBB00650.35 BB00
373vd6_B_DG38_DA39BB2BB07810.16 BB07
383vd6_B_DA39_DC40NANNANT00.49 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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