Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Replication of N2,3-Ethenoguanine by DNA Polymerases
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3v6k_P_DG5_DA6 | BBw | BB16 | 8 | 0.60 |
| 02 | 3v6k_P_DA6_DA7 | BBB | BB01 | 77 | 0.14 |
| 03 | 3v6k_P_DA7_DG8 | A-B | AB03 | 79 | 0.18 |
| 04 | 3v6k_P_DG8_DG9 | BBB | BB00 | 70 | 0.27 |
| 05 | 3v6k_P_DG9_DA10 | BBB | BB00 | 60 | 0.27 |
| 06 | 3v6k_P_DA10_DT11 | BBB | BB00 | 36 | 0.28 |
| 07 | 3v6k_P_DT11_DT12 | BBB | BB00 | 54 | 0.25 |
| 08 | 3v6k_P_DT12_DC13 | BBB | BB00 | 41 | 0.37 |
| 09 | 3v6k_B_DT1_DC2 | NAN | NANT | 0 | 0.75 |
| 10 | 3v6k_B_DC2_DA3 | NAN | NANT | 0 | 0.80 |
| 11 | 3v6k_B_DA3_DC4 | NAN | NANT | 0 | 0.62 |
| 12 | 3v6k_B_DG6_DA7 | BBB | BB00 | 56 | 0.28 |
| 13 | 3v6k_B_DA7_DA8 | BBw | BB02 | 17 | 0.36 |
| 14 | 3v6k_B_DA8_DT9 | NAN | NANT | 0 | 0.35 |
| 15 | 3v6k_B_DT9_DC10 | BBB | BB01 | 24 | 0.46 |
| 16 | 3v6k_B_DC10_DC11 | NAN | NANT | 0 | 0.40 |
| 17 | 3v6k_B_DC11_DT12 | NAN | NANT | 0 | 0.47 |
| 18 | 3v6k_B_DT12_DT13 | NAN | NANT | 0 | 0.64 |
| 19 | 3v6k_B_DT13_DC14 | NAN | NANT | 0 | 0.78 |
| 20 | 3v6k_K_DG5_DA6 | BBB | BB00 | 48 | 0.29 |
| 21 | 3v6k_K_DA6_DA7 | BBB | BB00 | 53 | 0.17 |
| 22 | 3v6k_K_DA7_DG8 | B12 | BB04 | 38 | 0.26 |
| 23 | 3v6k_K_DG8_DG9 | BBB | BB00 | 62 | 0.33 |
| 24 | 3v6k_K_DG9_DA10 | BBB | BB00 | 62 | 0.29 |
| 25 | 3v6k_K_DA10_DT11 | BBB | BB01 | 14 | 0.18 |
| 26 | 3v6k_K_DT11_DT12 | BBB | BB01 | 40 | 0.29 |
| 27 | 3v6k_K_DT12_DC13 | BBB | BB00 | 62 | 0.37 |
| 28 | 3v6k_M_DC2_DA3 | NAN | NANT | 0 | 1.09 |
| 29 | 3v6k_M_DA3_DC4 | NAN | NANT | 0 | 0.87 |
| 30 | 3v6k_M_DG6_DA7 | B12 | BB04 | 79 | 0.21 |
| 31 | 3v6k_M_DA7_DA8 | BBw | BB02 | 51 | 0.28 |
| 32 | 3v6k_M_DA8_DT9 | NAN | NANT | 0 | 0.48 |
| 33 | 3v6k_M_DT9_DC10 | BBB | BB00 | 17 | 0.31 |
| 34 | 3v6k_M_DC10_DC11 | miB | BB15 | 64 | 0.41 |
| 35 | 3v6k_M_DC11_DT12 | B-A | BA17 | 67 | 0.23 |
| 36 | 3v6k_M_DT12_DT13 | BBB | BB01 | 48 | 0.21 |
| 37 | 3v6k_M_DT13_DC14 | BBB | BB00 | 71 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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