Conformers:
ABBIImiBZICOPNSYNN
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Co-crystal Structure of Rat DNA polymerase beta Mutator I260Q: Enzyme-DNA-ddTTP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3uxp_P_DA1_DT2 | NAN | NANT | 0 | 0.38 |
| 02 | 3uxp_P_DT2_DG3 | B-A | BA08 | 61 | 0.32 |
| 03 | 3uxp_P_DG3_DT4 | NAN | NANT | 0 | 0.52 |
| 04 | 3uxp_P_DT4_DG5 | NAN | NANT | 0 | 0.58 |
| 05 | 3uxp_P_DG5_DA6 | A-B | AB02 | 28 | 0.34 |
| 06 | 3uxp_P_DA6_DG7 | B-A | BA05 | 29 | 0.36 |
| 07 | 3uxp_T_DA3_DC4 | NAN | NANT | 0 | 0.60 |
| 08 | 3uxp_T_DC4_DT5 | NAN | NANT | 0 | 0.66 |
| 09 | 3uxp_T_DT5_DC6 | A-B | AB01 | 36 | 0.30 |
| 10 | 3uxp_T_DC6_DA7 | BBB | BB00 | 81 | 0.19 |
| 11 | 3uxp_T_DA7_DC8 | B-A | BA08 | 58 | 0.48 |
| 12 | 3uxp_T_DC8_DA9 | A-B | AB02 | 64 | 0.41 |
| 13 | 3uxp_T_DA9_DT10 | NAN | NANT | 0 | 0.57 |
| 14 | 3uxp_D_DA1_DT2 | NAN | NANT | 0 | 0.55 |
| 15 | 3uxp_D_DT2_DG3 | NAN | NANT | 0 | 0.65 |
| 16 | 3uxp_D_DG3_DT4 | NAN | NANT | 0 | 0.70 |
| 17 | 3uxp_D_DT4_DG5 | NAN | NANT | 0 | 0.54 |
| 18 | 3uxp_D_DG5_DA6 | NAN | NANT | 0 | 0.41 |
| 19 | 3uxp_D_DA6_DG7 | AAA | AA00 | 9 | 0.34 |
| 20 | 3uxp_E_DA3_DC4 | NAN | NANT | 0 | 0.48 |
| 21 | 3uxp_E_DC4_DT5 | AAw | AA11 | 23 | 0.50 |
| 22 | 3uxp_E_DT5_DC6 | NAN | NANT | 0 | 0.66 |
| 23 | 3uxp_E_DC6_DA7 | A-B | AB02 | 83 | 0.20 |
| 24 | 3uxp_E_DA7_DC8 | NAN | NANT | 0 | 0.54 |
| 25 | 3uxp_E_DC8_DA9 | A-B | AB02 | 46 | 0.41 |
| 26 | 3uxp_E_DA9_DT10 | B-A | BA08 | 72 | 0.40 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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