Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of AddAB-DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3u44_X_DT1_DC2 | BBB | BB00 | 10 | 0.46 |
| 02 | 3u44_X_DC2_DT3 | NAN | NANT | 0 | 0.54 |
| 03 | 3u44_X_DT3_DA4 | NAN | NANT | 0 | 0.86 |
| 04 | 3u44_X_DA4_DA5 | NAN | NANT | 0 | 0.82 |
| 05 | 3u44_X_DA5_DT6 | NAN | NANT | 0 | 0.76 |
| 06 | 3u44_X_DT6_DG7 | NAN | NANT | 0 | 1.16 |
| 07 | 3u44_X_DG7_DC8 | BBB | BB00 | 64 | 0.39 |
| 08 | 3u44_X_DC8_DG9 | BBw | BB02 | 36 | 0.32 |
| 09 | 3u44_X_DG9_DA10 | NAN | NANT | 0 | 0.47 |
| 10 | 3u44_X_DA10_DG11 | BBB | BB00 | 72 | 0.27 |
| 11 | 3u44_X_DG11_DC12 | BBw | BB02 | 80 | 0.20 |
| 12 | 3u44_X_DC12_DA13 | BBw | BB02 | 57 | 0.35 |
| 13 | 3u44_X_DA13_DC14 | BBB | BB00 | 20 | 0.30 |
| 14 | 3u44_X_DC14_DT15 | NAN | NANT | 0 | 0.49 |
| 15 | 3u44_X_DT15_DG16 | NAN | NANT | 0 | 0.83 |
| 16 | 3u44_X_DC28_DA29 | NAN | NANT | 0 | 0.83 |
| 17 | 3u44_X_DA29_DG30 | BBB | BB00 | 18 | 0.49 |
| 18 | 3u44_X_DG30_DT31 | NAN | NANT | 0 | 0.49 |
| 19 | 3u44_X_DT31_DG32 | NAN | NANT | 0 | 0.55 |
| 20 | 3u44_X_DG32_DC33 | BBw | BB03 | 34 | 0.33 |
| 21 | 3u44_X_DC33_DT34 | BBw | BB02 | 45 | 0.41 |
| 22 | 3u44_X_DT34_DC35 | BBw | BB02 | 75 | 0.34 |
| 23 | 3u44_X_DC35_DG36 | BBB | BB00 | 52 | 0.24 |
| 24 | 3u44_X_DG36_DC37 | BBB | BB00 | 82 | 0.15 |
| 25 | 3u44_X_DC37_DA38 | BBw | BB02 | 86 | 0.21 |
| 26 | 3u44_X_DA38_DT39 | BBB | BB00 | 61 | 0.35 |
| 27 | 3u44_X_DT39_DT40 | NAN | NANT | 0 | 0.45 |
| 28 | 3u44_X_DT40_DA41 | NAN | NANT | 0 | 0.36 |
| 29 | 3u44_X_DA41_DG42 | BBw | BB16 | 28 | 0.46 |
| 30 | 3u44_X_DG42_DA43 | BBw | BB02 | 64 | 0.25 |
| 31 | 3u44_X_DA43_DT44 | NAN | NANT | 0 | 0.72 |
| 32 | 3u44_X_DT44_DT45 | NAN | NANT | 0 | 1.92 |
| 33 | 3u44_X_DT45_DT46 | NAN | NANT | 0 | 0.51 |
| 34 | 3u44_X_DT46_DT47 | NAN | NANT | 0 | 1.00 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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