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Conformers: ABBIImiBZICOPNSYNN
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Mouse Lin28A in complex with let-7g microRNA pre-element

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013ts2_U_G2_G3AAAAA00760.12 AA00
023ts2_U_G3_G4AAAAA00890.17 AA00
033ts2_U_G4_U5AAAAA00720.21 AA00
043ts2_U_U5_C6AAwAA06170.40 AA06
053ts2_U_C6_U7NANNANT00.49 OP30
063ts2_U_U7_A8NANNANT00.61 OP22
073ts2_U_A8_U9NANNANT00.85 OP14
083ts2_U_U9_G10NANNANT00.80 OP13
093ts2_U_G10_A11NANNANT01.22 BBS1
103ts2_U_A11_U12OPNOP22200.62 OP22
113ts2_U_U12_A13NANNANT01.35 OP16
123ts2_U_A13_C14A-BAB05670.43 AB05
133ts2_U_C14_C15NANNANT00.49 OP22
143ts2_U_C15_A16OPNOP16590.44 OP16
153ts2_U_A16_C17AAAAA00680.19 AA00
163ts2_U_C17_C18AAAAA00740.23 AA00
173ts2_U_C18_C19AAAAA00920.20 AA00
183ts2_U_C19_C20AAAAA00810.22 AA00
193ts2_U_C20_G21ICLIC02680.46 IC02
203ts2_U_G21_G22NANNANT02.00 OP1S
213ts2_U_G22_A23NANNANT01.79 ZZS2
223ts2_U_A23_G24NANNANT00.81 AB03
233ts2_V_G2_G3AAAAA00820.14 AA00
243ts2_V_G3_G4AAAAA00800.18 AA00
253ts2_V_G4_U5AAAAA00840.20 AA00
263ts2_V_U5_C6AAAAA00460.32 AA00
273ts2_V_C6_U7NANNANT00.71 OP30
283ts2_V_U7_A8NANNANT00.61 OP22
293ts2_V_A8_U9NANNANT00.84 OP14
303ts2_V_U9_G10NANNANT00.77 OP13
313ts2_V_G10_A11NANNANT01.19 BBS1
323ts2_V_A11_U12OPNOP22140.65 OP22
333ts2_V_U12_A13NANNANT01.34 OP16
343ts2_V_A13_C14A-BAB05700.43 AB05
353ts2_V_C14_C15NANNANT00.54 OP22
363ts2_V_C15_A16OPNOP16440.51 OP16
373ts2_V_A16_C17AAwAA01650.23 AA01
383ts2_V_C17_C18AAAAA08840.13 AA08
393ts2_V_C18_C19AAAAA00940.19 AA00
403ts2_V_C19_C20AAAAA00840.22 AA00
413ts2_V_C20_G21ICLIC02690.43 IC02
423ts2_V_G21_G22NANNANT00.33 ZZ1S
433ts2_V_G22_A23NANNANT00.70 AAS1
443ts2_V_A23_G24NANNANT00.76 AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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