Conformers:
ABBIImiBZICOPNSYNN
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Human MutSbeta complexed with an IDL of 3 bases (Loop3) and ADP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3thx_D_DT3_DC4 | BBB | BB00 | 67 | 0.26 |
| 02 | 3thx_D_DC4_DT5 | B12 | BB04 | 32 | 0.32 |
| 03 | 3thx_D_DT5_DA6 | BBw | BB03 | 33 | 0.49 |
| 04 | 3thx_D_DA6_DT7 | NAN | NANT | 0 | 0.43 |
| 05 | 3thx_D_DT7_DC8 | BBB | BB00 | 59 | 0.30 |
| 06 | 3thx_D_DC8_DT9 | B12 | BB04 | 21 | 0.36 |
| 07 | 3thx_D_DT9_DG10 | BBB | BB00 | 25 | 0.46 |
| 08 | 3thx_D_DG10_DA11 | BB2 | BB07 | 41 | 0.40 |
| 09 | 3thx_D_DA11_DA12 | NAN | NANT | 0 | 0.49 |
| 10 | 3thx_D_DA12_DG13 | NAN | NANT | 0 | 0.39 |
| 11 | 3thx_D_DG13_DC14 | BBB | BB00 | 70 | 0.38 |
| 12 | 3thx_D_DC14_DC15 | NAN | NANT | 0 | 1.24 |
| 13 | 3thx_D_DC15_DG16 | NAN | NANT | 0 | 0.42 |
| 14 | 3thx_D_DG16_DA17 | A-B | AB01 | 83 | 0.19 |
| 15 | 3thx_D_DA17_DT18 | BBB | BB01 | 49 | 0.28 |
| 16 | 3thx_D_DT18_DC19 | BBB | BB00 | 23 | 0.20 |
| 17 | 3thx_D_DC19_DG20 | B12 | BB04 | 58 | 0.24 |
| 18 | 3thx_D_DG20_DA21 | BBB | BB00 | 69 | 0.26 |
| 19 | 3thx_D_DA21_DT22 | B-A | BA09 | 59 | 0.35 |
| 20 | 3thx_D_DT22_DG23 | A-B | AB05 | 62 | 0.36 |
| 21 | 3thx_E_DT26_DC27 | NAN | NANT | 0 | 0.51 |
| 22 | 3thx_E_DC27_DA28 | BBw | BB03 | 74 | 0.29 |
| 23 | 3thx_E_DA28_DT29 | BBw | BB02 | 29 | 0.35 |
| 24 | 3thx_E_DT29_DC30 | BBB | BB00 | 63 | 0.26 |
| 25 | 3thx_E_DC30_DG31 | BBw | BB02 | 36 | 0.49 |
| 26 | 3thx_E_DG31_DA32 | BBB | BB00 | 40 | 0.41 |
| 27 | 3thx_E_DA32_DT33 | BBB | BB00 | 86 | 0.17 |
| 28 | 3thx_E_DT33_DC34 | BBB | BB00 | 47 | 0.32 |
| 29 | 3thx_E_DC34_DG35 | BBB | BB00 | 46 | 0.38 |
| 30 | 3thx_E_DG35_DA36 | NAN | NANT | 0 | 1.48 |
| 31 | 3thx_E_DA36_DC37 | NAN | NANT | 0 | 0.65 |
| 32 | 3thx_E_DC37_DA.A38 | NAN | NANT | 0 | 0.41 |
| 33 | 3thx_E_DC37_DA.B38 | NAN | NANT | 0 | 0.65 |
| 34 | 3thx_E_DA.A38_DG.A39 | NAN | NANT | 0 | 0.79 |
| 35 | 3thx_E_DA.B38_DG.B39 | NAN | NANT | 0 | 0.82 |
| 36 | 3thx_E_DG.A39_DC.A40 | NAN | NANT | 0 | 0.65 |
| 37 | 3thx_E_DG.B39_DC.B40 | A-B | AB01 | 8 | 0.44 |
| 38 | 3thx_E_DC.A40_DT41 | NAN | NANT | 0 | 0.66 |
| 39 | 3thx_E_DC.B40_DT41 | NAN | NANT | 0 | 0.58 |
| 40 | 3thx_E_DT41_DT42 | NAN | NANT | 0 | 0.39 |
| 41 | 3thx_E_DT42_DC43 | B-A | BA08 | 68 | 0.37 |
| 42 | 3thx_E_DC43_DA44 | A-B | AB03 | 89 | 0.18 |
| 43 | 3thx_E_DA44_DG45 | B-A | BA17 | 66 | 0.34 |
| 44 | 3thx_E_DG45_DA46 | BBB | BB00 | 11 | 0.29 |
| 45 | 3thx_E_DA46_DT47 | BBB | BB00 | 82 | 0.21 |
| 46 | 3thx_E_DT47_DA48 | BBw | BB02 | 57 | 0.28 |
| 47 | 3thx_E_DA48_DG49 | NAN | NANT | 0 | 0.56 |
| 48 | 3thx_E_DG49_DG50 | BBB | BB00 | 25 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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