Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Human MutSbeta complexed with an IDL of 4 bases (Loop4) and ADP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 55 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3thw_D_DC1_DC2 | NAN | NANT | 0 | 0.40 |
| 02 | 3thw_D_DC2_DT3 | A-B | AB02 | 62 | 0.38 |
| 03 | 3thw_D_DT3_DC4 | NAN | NANT | 0 | 0.69 |
| 04 | 3thw_D_DC4_DT5 | NAN | NANT | 0 | 0.80 |
| 05 | 3thw_D_DT5_DA6 | NAN | NANT | 0 | 0.52 |
| 06 | 3thw_D_DA6_DT7 | B-A | BA01 | 13 | 0.24 |
| 07 | 3thw_D_DT7_DC8 | NAN | NANT | 0 | 0.40 |
| 08 | 3thw_D_DC8_DT9 | NAN | NANT | 0 | 0.53 |
| 09 | 3thw_D_DT9_DG10 | BBB | BB00 | 87 | 0.17 |
| 10 | 3thw_D_DG10_DA11 | BBB | BB00 | 73 | 0.33 |
| 11 | 3thw_D_DA11_DA12 | miB | BB13 | 10 | 0.46 |
| 12 | 3thw_D_DA12_DG13 | BBB | BB00 | 36 | 0.44 |
| 13 | 3thw_D_DG13_DC14 | NAN | NANT | 0 | 0.33 |
| 14 | 3thw_D_DC14_DC15 | NAN | NANT | 0 | 0.75 |
| 15 | 3thw_D_DC15_DG16 | NAN | NANT | 0 | 0.43 |
| 16 | 3thw_D_DG16_DA17 | BBB | BB00 | 40 | 0.38 |
| 17 | 3thw_D_DA17_DT18 | BBB | BB00 | 40 | 0.27 |
| 18 | 3thw_D_DT18_DC19 | BBw | BB02 | 47 | 0.30 |
| 19 | 3thw_D_DC19_DG20 | BBB | BB00 | 20 | 0.40 |
| 20 | 3thw_D_DG20_DA21 | BBB | BB00 | 68 | 0.24 |
| 21 | 3thw_D_DA21_DT22 | NAN | NANT | 0 | 0.59 |
| 22 | 3thw_D_DT22_DG23 | NAN | NANT | 0 | 0.57 |
| 23 | 3thw_D_DG23_DA24 | NAN | NANT | 0 | 0.73 |
| 24 | 3thw_D_DA24_DA25 | NAN | NANT | 0 | 0.81 |
| 25 | 3thw_D_DA25_DG26 | NAN | NANT | 0 | 0.96 |
| 26 | 3thw_D_DG26_DC27 | NAN | NANT | 0 | 0.93 |
| 27 | 3thw_D_DC27_DA28 | NAN | NANT | 0 | 0.81 |
| 28 | 3thw_D_DA28_DT29 | BBB | BB00 | 14 | 0.58 |
| 29 | 3thw_D_DT29_DC30 | BBB | BB00 | 65 | 0.28 |
| 30 | 3thw_D_DC30_DG31 | B12 | BB05 | 15 | 0.47 |
| 31 | 3thw_D_DG31_DA32 | NAN | NANT | 0 | 0.80 |
| 32 | 3thw_D_DA32_DT33 | BBB | BB00 | 73 | 0.32 |
| 33 | 3thw_D_DT33_DC34 | BBw | BB02 | 45 | 0.27 |
| 34 | 3thw_D_DC34_DG35 | B12 | BB04 | 45 | 0.30 |
| 35 | 3thw_D_DG35_DC36 | NAN | NANT | 0 | 0.60 |
| 36 | 3thw_D_DC36_DA37 | NAN | NANT | 0 | 0.56 |
| 37 | 3thw_D_DA37_DC38 | BBw | BB02 | 57 | 0.21 |
| 38 | 3thw_D_DC38_DA.A39 | NAN | NANT | 0 | 0.91 |
| 39 | 3thw_D_DC38_DA.B39 | BBB | BB00 | 15 | 0.50 |
| 40 | 3thw_D_DA.A39_DG.A40 | NAN | NANT | 0 | 0.65 |
| 41 | 3thw_D_DA.B39_DG.B40 | NAN | NANT | 0 | 0.66 |
| 42 | 3thw_D_DG.A40_DC41 | A-B | AB03 | 49 | 0.26 |
| 43 | 3thw_D_DG.B40_DC41 | BBB | BB00 | 33 | 0.27 |
| 44 | 3thw_D_DC41_DT42 | BBB | BB00 | 91 | 0.19 |
| 45 | 3thw_D_DT42_DT43 | BBB | BB00 | 81 | 0.19 |
| 46 | 3thw_D_DT43_DC44 | BBB | BB00 | 87 | 0.19 |
| 47 | 3thw_D_DC44_DA45 | BBB | BB00 | 52 | 0.44 |
| 48 | 3thw_D_DA45_DG46 | BBB | BB00 | 84 | 0.24 |
| 49 | 3thw_D_DG46_DA47 | BBB | BB00 | 50 | 0.32 |
| 50 | 3thw_D_DA47_DT48 | NAN | NANT | 0 | 0.53 |
| 51 | 3thw_D_DT48_DA49 | NAN | NANT | 0 | 0.71 |
| 52 | 3thw_D_DA49_DG50 | A-B | AB01 | 13 | 0.52 |
| 53 | 3thw_D_DG50_DA51 | NAN | NANT | 0 | 0.47 |
| 54 | 3thw_D_DA51_DG52 | NAN | NANT | 0 | 0.58 |
| 55 | 3thw_D_DG52_DG53 | NAN | NANT | 0 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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